PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11332s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 118aa    MW: 12694.1 Da    PI: 6.956
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11332s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.56.3e-1762118257
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenl 57 
                     Wt++e+l+Lie  +e++++++rg lk ++Wee++ ++ ++ g+ rs++qC++k+e+l
  Csa11332s010.1  62 WTHDETLLLIESFKEKWDAIGRGPLKSNHWEEIAVAVsARSGVDRSATQCRHKIEKL 118
                     ***********************************998899**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510208.809133IPR009465Spondin, N-terminal
PROSITE profilePS500906.82962118IPR017877Myb-like domain
PfamPF138374.5E-1262118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
PTSSPPSDSN PNSAATPPDQ IQQQPSPPQP TDPSSPPPSH STVIALAATT SSVARKTQPV  60
LWTHDETLLL IESFKEKWDA IGRGPLKSNH WEEIAVAVSA RSGVDRSATQ CRHKIEKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11332s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513803.11e-79PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A1J3CS392e-53A0A1J3CS39_NOCCA; Trihelix transcription factor ASIL2 (Fragment)
STRINGXP_010513803.15e-79(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.13e-44Trihelix family protein