PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g001070.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 736aa MW: 83482.8 Da PI: 7.5463

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g001070.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.7	6.3e-31	87	178	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ +++eHnH+l+p Csa11g001070.1 87 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMHDSGKWLVSGFVKEHNHDLVP 178 9*************************************999888555667889********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-29	87	178	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	2.7E-12	291	337	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.608	307	339	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-8	314	341	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.7E-12	526	572	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.608	542	574	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-8	549	576	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MMDNEVLDFD IGVGVSSGGD VDDDAIDIEH HGLDEDDMLD SPIMPCGISL GNSENYFPNQ 60 EEEQQDLLDL EPYDGLEFES EEAAKAFYNS YARRIGFSTR VSSSRRSRRD GAIIQRQFVC 120 AKEGFRNMNE KRTKDREIKR PRTITRVGCK ASLSVKMHDS GKWLVSGFVK EHNHDLVPPD 180 QVHCLRSHRQ ISGPAKTLID TLQAAGMGPR RIMSALIKEY GGISKSRLEK EVKADYDTMN 240 SPPVLKTPSP MEKQASDLYT RKLFIRFQEE LVGTLTFMAS KAHDDGDLVT YTVAKYGEAH 300 KAHFIKFNVL EMRANCSCQM FEFSGIICRH ILAVFRVTNL LTLPPYYILK RWTRNAKSSV 360 IFDDYNLHAY ANYLESHTVR YNTLRHKASN FLQEAGKSLY TCDVAVVALQ EAAKTVSLAM 420 NKEVRRTMAN GHFKESSSVT DGKRMCCNED CQQDVPAQPE SRLEKEVKAD YDTMNSPPVL 480 KTPSPMEKQA SDLYTRKLFI RFQEELVGTL TFMASKAHDD GDLVTYTVAK YGEAHKAHFI 540 KFNVLEMRAN CSCQMFEFSG IICRHILAVF RVTNLLTLPP YYILKRWTRN AKSSVIFDDY 600 NLHAYANYLE SHTVRYNTLR HKASNFLQEA GKSLYTCDVA VVALQEAAKT VSLAMNKEVR 660 RTMANGHFKE TSSVTDGKRM CCNEDCQQDV PAQPEVSHHA GFPCRPPSLL QMAYFQEMSR 720 QVVXQNIKIS LKDNL*

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MMDNEVLDFD IGVGVSSGGD VDDDAIDIEH HGLDEDDMLD SPIMPCGISL GNSENYFPNQ  60
EEEQQDLLDL EPYDGLEFES EEAAKAFYNS YARRIGFSTR VSSSRRSRRD GAIIQRQFVC  120
AKEGFRNMNE KRTKDREIKR PRTITRVGCK ASLSVKMHDS GKWLVSGFVK EHNHDLVPPD  180
QVHCLRSHRQ ISGPAKTLID TLQAAGMGPR RIMSALIKEY GGISKSRLEK EVKADYDTMN  240
SPPVLKTPSP MEKQASDLYT RKLFIRFQEE LVGTLTFMAS KAHDDGDLVT YTVAKYGEAH  300
KAHFIKFNVL EMRANCSCQM FEFSGIICRH ILAVFRVTNL LTLPPYYILK RWTRNAKSSV  360
IFDDYNLHAY ANYLESHTVR YNTLRHKASN FLQEAGKSLY TCDVAVVALQ EAAKTVSLAM  420
NKEVRRTMAN GHFKESSSVT DGKRMCCNED CQQDVPAQPE SRLEKEVKAD YDTMNSPPVL  480
KTPSPMEKQA SDLYTRKLFI RFQEELVGTL TFMASKAHDD GDLVTYTVAK YGEAHKAHFI  540
KFNVLEMRAN CSCQMFEFSG IICRHILAVF RVTNLLTLPP YYILKRWTRN AKSSVIFDDY  600
NLHAYANYLE SHTVRYNTLR HKASNFLQEA GKSLYTCDVA VVALQEAAKT VSLAMNKEVR  660
RTMANGHFKE TSSVTDGKRM CCNEDCQQDV PAQPEVSHHA GFPCRPPSLL QMAYFQEMSR  720
QVVXQNIKIS LKDNL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g001070.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK319073	0.0	AK319073.1 Arabidopsis thaliana AT4G38180 mRNA, complete cds, clone: RAFL23-02-J06.
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	AY136457	0.0	AY136457.1 Arabidopsis thaliana unknown protein (At4g38180) mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010446320.1	1e-166	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_010497176.1	1e-168	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like, partial
Swissprot	Q9SZL8	1e-145	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	R0H1Z6	1e-150	R0H1Z6_9BRAS; Uncharacterized protein
STRING	XP_010444872.1	1e-172	(Camelina sativa)
STRING	XP_010446320.1	1e-166	(Camelina sativa)
STRING	XP_010497176.1	1e-168	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23888	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-147	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]