PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g001080.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 418aa MW: 46276.7 Da PI: 6.1251

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g001080.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.8	5.8e-31	89	180	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ ++ eHnH+l+p Csa11g001080.1 89 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMHDSGKWLVSGFVREHNHDLVP 180 **************************************999888555667889********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-29	89	180	IPR004330	FAR1 DNA binding domain
Pfam	PF03552	1.3E-62	269	400	IPR005150	Cellulose synthase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030244	Biological Process	cellulose biosynthetic process
GO:0016020	Cellular Component	membrane
GO:0016760	Molecular Function	cellulose synthase (UDP-forming) activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MMDNEVLDFD IGVGVSSGGD VDDDAIDIEH HGLDDDDMLD SPIMPCGISL GNSENYFPNQ 60 EEEEEQQDLL DLEPYDGLEF ESEEAAKAFY NSYARRIGFS TRVSSSRRSR RDGAIIQRQF 120 VCAKEGFRNM NEKRTKDREI KRPRTITRVG CKASLSVKMH DSGKWLVSGF VREHNHDLVP 180 PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKSRL EKEVKADYDT 240 MNSPPLLKTP SPMEKQASDL YTRKLFIRXY AVVQGILKVL AGIEISFTLT TKSGGDDNDD 300 IYADLYIVKW SSLMIPPIVI AMVNIIAIVV AFVRTIYQAV PQWSKLIGGA FFSFWVLAHL 360 YPFAKGLMGR RGKTPTIVFV WAGLIAITIS LLWTAINPNT GPAAAAEGVG GGGFQFP*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MMDNEVLDFD IGVGVSSGGD VDDDAIDIEH HGLDDDDMLD SPIMPCGISL GNSENYFPNQ  60
EEEEEQQDLL DLEPYDGLEF ESEEAAKAFY NSYARRIGFS TRVSSSRRSR RDGAIIQRQF  120
VCAKEGFRNM NEKRTKDREI KRPRTITRVG CKASLSVKMH DSGKWLVSGF VREHNHDLVP  180
PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKSRL EKEVKADYDT  240
MNSPPLLKTP SPMEKQASDL YTRKLFIRXY AVVQGILKVL AGIEISFTLT TKSGGDDNDD  300
IYADLYIVKW SSLMIPPIVI AMVNIIAIVV AFVRTIYQAV PQWSKLIGGA FFSFWVLAHL  360
YPFAKGLMGR RGKTPTIVFV WAGLIAITIS LLWTAINPNT GPAAAAEGVG GGGFQFP*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g001080.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	AY136457	0.0	AY136457.1 Arabidopsis thaliana unknown protein (At4g38180) mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019088089.1	1e-147	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	1e-138	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	R0H1Z6	1e-140	R0H1Z6_9BRAS; Uncharacterized protein
STRING	Bostr.25542s0007.1.p	1e-141	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23888	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-113	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]