PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g003660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 223aa    MW: 25206.7 Da    PI: 9.8935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g003660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-12153199455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A ++Ik+Lq
  Csa11g003660.1 153 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDALKHIKYLQ 199
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-15147211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.983149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10153199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.36E-12154203No hitNo description
SMARTSM003533.8E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNMLSXIHKM EIEENSIVQQ FHMNSIVGEV HEAQYTLPHS FPTNIDPSYD DDLIEMKPSK  60
ILKTTYILPQ LPPPHSSSLP PNSKPHLHHQ PSSRILSFGN AGSNVMDHEY SPNSIFSPKV  120
EAEVPPHRNS EPIIQKGAKR TQPLPRSQSN AQDHIIAERK RREKLTQRFV ALSALVPGLK  180
KMDKASVLGD ALKHIKYLQA LQQICTLLTR EKRYHRSLIA FS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g003660.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885679e-86AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437177.21e-125PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0726e-95BH025_ARATH; Transcription factor bHLH25
TrEMBLR0F3251e-107R0F325_9BRAS; Uncharacterized protein
STRINGXP_010437175.11e-145(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-86bHLH family protein