PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g004020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 243aa    MW: 26741.6 Da    PI: 8.3367
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g004020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.21.7e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  Csa11g004020.1   2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISAVPELQRPALFQSLLFEACGRTVNPVNGAVGMFWTGNWHVCQA 96 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  Csa11g004020.1  97 AVETVLR 103
                     *998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.4951107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPELQR  60
PALFQSLLFE ACGRTVNPVN GAVGMFWTGN WHVCQAAVET VLRGGTLRPI SDLLESPSLM  120
ISSDESSVIF HRDVSRNENQ HRRFSTSGSM TEMKDSPVDR KRMKSDSDLD LQVNHQGLTL  180
TASAVPVPFI PPPLFCKVVN GDRPGSPSEE SVTTSCWENG MRGDNNKYKR NKGDKKLLNL  240
FV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g004020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0872910.0AY087291.1 Arabidopsis thaliana clone 33704 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437217.10.0PREDICTED: LOB domain-containing protein 39 isoform X4
SwissprotQ9SZE81e-156LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A178V3Q31e-154A0A178V3Q3_ARATH; LBD39
STRINGXP_010432050.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-159LOB domain-containing protein 39