PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g004180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 143aa    MW: 16386.1 Da    PI: 9.1458
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g004180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.31.3e-201057249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie+  +r++ f+kR+ng+lKKA+ELS LCd+ v ++ fs++gkl+ +
  Csa11g004180.1 10 KIEDRQQRNIAFAKRKNGLLKKAYELSLLCDVAVGLLFFSPSGKLFIF 57
                    69*******************************************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.9E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.572161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-20258IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-20323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGRVKIQIMK IEDRQQRNIA FAKRKNGLLK KAYELSLLCD VAVGLLFFSP SGKLFIFDAK  60
LREIRDDGKI EDEIDKCHIK LAEVERELGR YLKSPNQWES LAELKDRVEL LETTLTKVQS  120
RKKELESKPK HADTGLELSS VE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-16157157MEF2 CHIMERA
6byy_B3e-16157157MEF2 CHIMERA
6byy_C3e-16157157MEF2 CHIMERA
6byy_D3e-16157157MEF2 CHIMERA
6bz1_A3e-16159159MEF2 CHIMERA
6bz1_B3e-16159159MEF2 CHIMERA
6bz1_C3e-16159159MEF2 CHIMERA
6bz1_D3e-16159159MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g004180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446661.18e-65PREDICTED: agamous-like MADS-box protein AGL104
TrEMBLM4D5K64e-42M4D5K6_BRARP; Uncharacterized protein
STRINGXP_010446661.13e-64(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-22AGAMOUS-like 66