PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g005070.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 379aa MW: 42020.2 Da PI: 4.5536

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g005070.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	205.7	2.7e-63	123	377	2	263
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eALa+ l++ + p + +s+++ ++++ a k +s +sPi+ fsh Csa11g005070.1 123 IEDLIRVVDCVESDELQLAQVILSRLNQRlRSPSGRPLQRAAFYFKEALASLLTG-----TNRNPIRLSSWSEIVQRIRAIKEYSGISPIPLFSH 212 678***********************99*********************.....778899999999******************* PP GRAS 96 ltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 +taNqaIl++++++ vH++Df+i+ G+Q+++L++++a+++ + lR+T+v+++e + e++ ++e+L++fA+e++++f++++++ k++e Csa11g005070.1 213 FTANQAILDSLSSQsssPFVHVVDFEIGFGGQYASLMREIAEKSVSGGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIRFQIEFVLLKTFE 305 *******99977789**********************************66..9***************************** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealey 263 +l+++++r+ +gE ++V ++ +++r l s + ++++ ++++s kvvv+v++e ++ +s+s ++f++ale+ Csa11g005070.1 306 MLSFKAIRFVEGERTIVLISPAIFRRL-------SGIADFVNNLRRVSTKVVVFVDSEgwTEIaGSGSIRREFVSALEF 377 **********************9.......34556*****************666668899999999999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	31.801	96	378	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-61	123	377	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MKIPASSPQD TTNNNSTDSN HLSMDEHVMR SMDWDSIMKE LELDDDSAPN SLKTGFTTTT 60 ATTDSTILPL YAVDSNLPGF PDQIQPSDFE SSTDIVYPGQ NQQPTGYGFN SLDGVDNGGF 120 DFIEDLIRVV DCVESDELQL AQVILSRLNQ RLRSPSGRPL QRAAFYFKEA LASLLTGTNR 180 NPIRLSSWSE IVQRIRAIKE YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG 240 FGGQYASLMR EIAEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL 300 LKTFEMLSFK AIRFVEGERT IVLISPAIFR RLSGIADFVN NLRRVSTKVV VFVDSEGWTE 360 IAGSGSIRRE FVSALEFX*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MKIPASSPQD TTNNNSTDSN HLSMDEHVMR SMDWDSIMKE LELDDDSAPN SLKTGFTTTT  60
ATTDSTILPL YAVDSNLPGF PDQIQPSDFE SSTDIVYPGQ NQQPTGYGFN SLDGVDNGGF  120
DFIEDLIRVV DCVESDELQL AQVILSRLNQ RLRSPSGRPL QRAAFYFKEA LASLLTGTNR  180
NPIRLSSWSE IVQRIRAIKE YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG  240
FGGQYASLMR EIAEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL  300
LKTFEMLSFK AIRFVEGERT IVLISPAIFR RLSGIADFVN NLRRVSTKVV VFVDSEGWTE  360
IAGSGSIRRE FVSALEFX*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-14	128	377	25	269	Protein SCARECROW
5b3h_A	7e-14	128	377	24	268	Protein SCARECROW
5b3h_D	7e-14	128	377	24	268	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g005070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118497	0.0	AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11.
GenBank	AK229637	0.0	AK229637.1 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL19-66-B20.
GenBank	AL161589	0.0	AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBank	BT011807	0.0	BT011807.1 Arabidopsis thaliana At4g36710 mRNA sequence.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z99708	0.0	Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019088585.1	0.0	PREDICTED: scarecrow-like protein 15 isoform X1
Swissprot	O23210	0.0	SCL15_ARATH; Scarecrow-like protein 15
TrEMBL	R0F561	0.0	R0F561_9BRAS; Uncharacterized protein
STRING	XP_010437312.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4291	28	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	0.0	GRAS family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]