PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g005220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 65aa    MW: 7299.07 Da    PI: 9.5793
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g005220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-071148338
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlk 38
                      WT  E +l+ +a +++  +   +W+ +ar +g +++++
   Csa11g005220.1 11 TWTSKENKLFERALAKYDQDtpdRWHNVARAVG-NKSAE 48
                     6******************9*************.99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-10449IPR009057Homeodomain-like
CDDcd001672.72E-51149No hitNo description
PfamPF002491.2E-51148IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MAYNSSSSNA TWTSKENKLF ERALAKYDQD TPDRWHNVAR AVGNKSAEEG LLKSTKIFYQ  60
SKDI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g005220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895491e-38AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282757.26e-24protein RADIALIS-like 3
SwissprotQ6NNN02e-19RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLR0GTL01e-22R0GTL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006282757.12e-23(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36570.15e-22RAD-like 3