PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g006180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 361aa    MW: 36438.2 Da    PI: 5.0266
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g006180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-05212232323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C++Cg++F ++     H+r H
  Csa11g006180.1 212 CHICGRRFGSWKAVFGHMRAH 232
                     *******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSDNAEKAKA IDTDVERDES EEQGSDDDSE TREIVLGLPA LSISSRVSGD IIVAEREENE  60
ARLNEQAVAA AEEAVVKGKS DAGAGVSESS VYEQAVIAAG LVVAAAEEAV MKGKSDAGAG  120
ASESRLDEQA VVAAGLVVAA AEEAVMKGKG DECGSGGKKK GEEGGSGGKK KSRPRTSTQT  180
DDEADGSSKG EAKKPKKKGS ELTNPPKGPP LCHICGRRFG SWKAVFGHMR AHKDRNYQGS  240
LPPPTFSAAP EVFTIPGKSS AFSIVTAGGE SAVAIASGGE SAGGVASGVG SSSVIASGGA  300
GGASGGEGGR EVGIDLNVKA VEDTEAASGS GTDVSSILIN LHRKKKRKRI KPSDNLFQSI  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342348RKKKRKR
2344351KKRKRIKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g006180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432256.11e-149PREDICTED: uncharacterized protein LOC104716569
TrEMBLR0H2J19e-92R0H2J1_9BRAS; Uncharacterized protein
STRINGXP_010432256.11e-149(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.15e-41C2H2 family protein