PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g007540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 276aa    MW: 29843 Da    PI: 5.4464
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g007540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18139188255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     g++GVr+++ +g+++AeIrdp+    r +r++lg+f tae+Aa+a+++a+  ++g
  Csa11g007540.1 139 GFRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAEDAARAYDKAAIGFRG 188
                     89*******.**********83....57*********************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-36139202IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-21139197IPR016177DNA-binding domain
PROSITE profilePS5103223.617139196IPR001471AP2/ERF domain
PfamPF008471.6E-11139187IPR001471AP2/ERF domain
CDDcd000184.73E-31140196No hitNo description
Gene3DG3DSA:3.30.730.102.1E-31140196IPR001471AP2/ERF domain
PRINTSPR003674.8E-11140151IPR001471AP2/ERF domain
PRINTSPR003674.8E-11162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MHYPNNRTEF VGDPASTRIH YQKEQLSPEQ ELSVIVSALQ HVMSGENDTT PFHGFSGDST  60
VISAGMPRSD SDTCQVCRIE GCLGCDYFFT PNQRIEKIQQ EEEITSGSRK GSSAAAAAAA  120
AKKSEGGGKI RKRKNKKNGF RGVRQRPWGK FAAEIRDPKR ATRVWLGTFE TAEDAARAYD  180
KAAIGFRGPR AKLNFPFADY TSSVSSPVAA DDIGANASVS ASASVSATDS VEAEQWRGGE  240
GGDCNMEEWM NMMMMMDFGN GDSSDSGNTI ADMFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-24136197264ATERF1
3gcc_A8e-24136197264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g007540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3250911e-162AF325091.1 Arabidopsis thaliana putative protein (F10M10.180) mRNA, complete cds.
GenBankAL0355211e-162AL035521.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M10 (ESSA project).
GenBankAL1615851e-162AL161585.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81.
GenBankAY0641511e-162AY064151.1 Arabidopsis thaliana AT4g34410/F10M10_180 mRNA, complete cds.
GenBankAY1207001e-162AY120700.1 Arabidopsis thaliana AT4g34410/F10M10_180 mRNA, complete cds.
GenBankCP0026871e-162CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437621.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ061e-129EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLR0GGG61e-156R0GGG6_9BRAS; Uncharacterized protein
STRINGXP_010437621.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.17e-90redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]