PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g009690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 256aa    MW: 29514.8 Da    PI: 10.0557
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g009690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-162469147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed+ l ++v+q+G+++W+ Ia+++  gR++k+c++rw++ 
   Csa11g009690.1 24 RGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 69
                     899****************************9.************96 PP
2Myb_DNA-binding56.37.5e-1876119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++++k++++ 
   Csa11g009690.1  76 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNSVKNHFHV 119
                      689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.4871974IPR017930Myb domain
SuperFamilySSF466895.24E-2922117IPR009057Homeodomain-like
SMARTSM007173.4E-142372IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-252577IPR009057Homeodomain-like
PfamPF139211.3E-162787No hitNo description
CDDcd001674.40E-132768No hitNo description
SMARTSM007177.2E-1575123IPR001005SANT/Myb domain
PROSITE profilePS5129418.60975125IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2078123IPR009057Homeodomain-like
CDDcd001674.61E-1178118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEIASMEMSR GSNSFDNKKP SCQRGHWRPV EDDNLRQLVE QYGPKNWNFI AQHLYGRSGK  60
SCRLRWYNQL DPNITKKPFT EEEEERLLKA HRIQGNRWAS IARLFPGRTD NSVKNHFHVI  120
MARRKRENLS STATSTFSQT WHNVLSPSSS VTRLNRSQFG LWRYQKDKRR GLWPCSFVPS  180
PGNDQFGSSS VSNVRHEVLL ERRTSKELVD HHNHTFHEAT PDNNKTSGED GPSMENDVEK  240
NNVTFIDFLG VGLTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-34201243107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g009690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1425170.0AY142517.1 Arabidopsis thaliana putative transcription factor (At4g33450) mRNA, complete cds.
GenBankAY5196110.0AY519611.1 Arabidopsis thaliana MYB transcription factor (At4g33450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437762.10.0PREDICTED: myb-related protein A-like
TrEMBLD7M8R21e-166D7M8R2_ARALL; AtMYB69
STRINGXP_010437762.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-165myb domain protein 69