PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g011520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 632aa    MW: 71600.3 Da    PI: 7.4042
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g011520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.4e-29188246158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                     ++Dg++WrKYGqK+ +++  pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh
  Csa11g011520.1 188 VKDGFQWRKYGQKVTRDNSSPRAYFRCSFApSCPVKKKVQRSAEDPSLLVATYEGTHNH 246
                     58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-27179247IPR003657WRKY domain
SuperFamilySSF1182906.15E-24184247IPR003657WRKY domain
SMARTSM007749.3E-33188248IPR003657WRKY domain
PfamPF031062.8E-23189246IPR003657WRKY domain
PROSITE profilePS5081124.352190249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MDCSSFLDLN TNPFPEKLLP VSPPDLSSDP FPKSKKKEVS VSASTQLKKK WLKQDESASE  60
LREELNRVNS ENKLLTEKLA TVYQNYYALH HHLEKLQSRQ SPEIDQTEQP MKKRKQDPDE  120
LLGFPIGLGS GITENSSSNE DHHHHQQQQH EQKNQLLSCK RPVTDSFNKA KVSTVYVPTD  180
TSDTSLTVKD GFQWRKYGQK VTRDNSSPRA YFRCSFAPSC PVKKKVQRSA EDPSLLVATY  240
EGTHNHLGPN ASEGDVTSQN GSNTVTLDLV HGSHRLALEK NERNSMQEVL VQQMASSLTK  300
DSKFTAALAA AISGRRGDGC TVVECYTPRK VVGRWLSGLR SSKGKRETGE GVAEDGTRGY  360
KLPPIRCSTK RLNENSPETN RFESQSREAP LEMGIGSFLL YLVIASKTEL DKMTNLRMQM  420
EMFLLNAKEE LQKKEVEANP PMSSNEASGY QFSPQEFSNL ASSIFHESST SVLLQEEYTE  480
FEVSKLQAEV GRLPLDEKAE DRHPKYQIQR QRKLEENEVT KSHIPEMVVT DERNGVCPFE  540
LEKKLHELLE TRQQEELLKL ETALSRVERR LQEKETEVSW WKDAARLLAQ RVPESSRSGL  600
DWCNPESSTC SERSLPRSYK ACSKHRTSFS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-171812461174Probable WRKY transcription factor 4
2lex_A1e-171812461174Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates asymmetric cell division (ACD), especially in stomatal-lineage cells (PubMed:21963668). Acts as a stomatal lineage scaffold which regulates subcellular localization and transient polarization of kinases (e.g. ASK7/BIN2 and ASK3/SK12) involved in ACD in a BASL-dependent manner (PubMed:30429609). Promotes the differentiation of both pavement cells and stomata (PubMed:30429609). {ECO:0000269|PubMed:21963668, ECO:0000269|PubMed:30429609}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g011520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2246980.0AF224698.1 Arabidopsis thaliana WRKY DNA-binding protein 18 (WRKY18) mRNA, complete cds.
GenBankAF4284210.0AF428421.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds.
GenBankAK2274010.0AK227401.1 Arabidopsis thaliana mRNA for WRKY like transcription factor, complete cds, clone: RAFL14-06-B12.
GenBankAY0880480.0AY088048.1 Arabidopsis thaliana clone 40692 mRNA, complete sequence.
GenBankAY1255570.0AY125557.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437989.10.0PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like
SwissprotQ6NQ991e-174POLAR_ARATH; Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION
TrEMBLD7MAV40.0D7MAV4_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70007740.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1042422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.11e-165WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Facette MR,Smith LG
    Division polarity in developing stomata.
    Curr. Opin. Plant Biol., 2012. 15(6): p. 585-92
    [PMID:23044038]
  2. Stamatiou G, et al.
    Forward genetic screening for the improved production of fermentable sugars from plant biomass.
    PLoS ONE, 2013. 8(1): p. e55616
    [PMID:23383246]
  3. Kierzkowski D,Lenhard M,Smith R,Kuhlemeier C
    Interaction between meristem tissue layers controls phyllotaxis.
    Dev. Cell, 2013. 26(6): p. 616-28
    [PMID:24091013]
  4. Houbaert A, et al.
    POLAR-guided signalling complex assembly and localization drive asymmetric cell division.
    Nature, 2018. 563(7732): p. 574-578
    [PMID:30429609]