PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g012120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 296aa    MW: 33697.7 Da    PI: 4.7439
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g012120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.46.8e-121997280
        trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80
                    Wt +  l L++    +e++ +++ +  ++W  +s+++ +  ++r+ +qC+ kw++l  +y +ik++e++ +  ++s ++
  Csa11g012120.1 19 WTVKDCLILVNEIAAVESDCSNALSSFQKWTMISENCNALDVRRTLNQCRRKWDSLLSDYNQIKQWESRSQGSARSYWS 97
                    99999999************************************************************98666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.3E-101898No hitNo description
PROSITE profilePS500906.6321975IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDEGTSGSRR LRSQVAPDWT VKDCLILVNE IAAVESDCSN ALSSFQKWTM ISENCNALDV  60
RRTLNQCRRK WDSLLSDYNQ IKQWESRSQG SARSYWSLSV EKRKLLNLPG NVDKEIFEAV  120
SAVVMIQDDK AGTESDSDPE EDDVVDITAE FAYVGSKRSR QRATVTKEIP PQKTKIQEPR  180
RYRVEEYSQQ KPTKAAHPHQ NKTMEEEKKP AEEISTDEEE EEPMNIEEDV EVTQAKLSYK  240
IDLIHAIVGR NLAKDNETGD DISIKDKLKY VRQQGDELIA CLSEIVKTLG RLREV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161KRSRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g012120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438058.10.0PREDICTED: trihelix transcription factor ASR3-like
RefseqXP_010438059.10.0PREDICTED: trihelix transcription factor ASR3-like
RefseqXP_010438060.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLR0GJH31e-167R0GJH3_9BRAS; Uncharacterized protein
STRINGXP_010438058.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-138sequence-specific DNA binding transcription factors