PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g015790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 240aa    MW: 26522.6 Da    PI: 4.5006
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g015790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171465147
                     TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqky 47
                     +g+WT+eEd++l+d+++ +G+g        ++Ia++++ gRt++++k++w+++
   Csa11g015790.1 14 KGPWTAEEDQKLIDYIRFHGPGtwrilpKNAAIAARLP-GRTDNEIKNHWNTH 65
                     79********************4444444468999999.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-23574IPR009057Homeodomain-like
SuperFamilySSF466892.3E-16876IPR009057Homeodomain-like
PROSITE profilePS5129423.025970IPR017930Myb domain
SMARTSM007173.2E-131368IPR001005SANT/Myb domain
PfamPF002491.1E-141465IPR001005SANT/Myb domain
CDDcd001674.67E-151666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRSPCCDKN GVKKGPWTAE EDQKLIDYIR FHGPGTWRIL PKNAAIAARL PGRTDNEIKN  60
HWNTHIRKRL VRSGIDPVTH SPRLDLLDLS SLLGVIFNQQ NFSSVATHAS SLLNPDLLRL  120
ASLLLPLQNP NPTYASNVDQ NLQTPITSSE SSQPQTESTT PTNNNEINSS FEPMNPRLDD  180
VGLADVLPPL SESTFDLDSL MSTPMSSPQQ NSIEAEEANP SSFFDFGFPD DFILDDFMF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g015790.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355241e-171AL035524.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project).
GenBankAL1615721e-171AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68.
GenBankAY5196101e-171AY519610.1 Arabidopsis thaliana MYB transcription factor (At4g28110) mRNA, complete cds.
GenBankBT0019301e-171BT001930.1 Arabidopsis thaliana clone C103440 putative myb family transcription factor (At4g28110) mRNA, complete cds.
GenBankCP0026871e-171CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438501.11e-137PREDICTED: transcription factor MYB39-like
SwissprotQ9M0J51e-120MYB41_ARATH; Transcription factor MYB41
TrEMBLD7MDM81e-126D7MDM8_ARALL; AtMYB41
STRINGXP_010438501.11e-137(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-82myb domain protein 41
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]