PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g017590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 649aa    MW: 71533.7 Da    PI: 8.5982
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g017590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.2e-31242299260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++++i+Y+g+H+h+k
  Csa11g017590.1 242 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 299
                     8****************************************.***************85 PP
2WRKY106.51.3e-33469527159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Csa11g017590.1 469 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAAGCPVRKHVERASHDPKAVITTYEGKHNHD 527
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.388236300IPR003657WRKY domain
SuperFamilySSF1182909.55E-25239300IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-26240300IPR003657WRKY domain
SMARTSM007748.5E-34241299IPR003657WRKY domain
PfamPF031063.0E-24242298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37454529IPR003657WRKY domain
SuperFamilySSF1182902.88E-29461529IPR003657WRKY domain
PROSITE profilePS5081138.825464529IPR003657WRKY domain
SMARTSM007747.7E-39469528IPR003657WRKY domain
PfamPF031065.0E-26470527IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MNPQLNDRKE LHQVDRSATG DLAARHDSAG GGGSGGGGAR YKLMSPAKLP ISRSTDITIP  60
PGLSPTSFLE SPVFISNIKI WFRFYKIRYV LCSIHAIDNT PIFFNFQPEP SPTTGSLFKP  120
RPVHISASSS SYTGRAFHQN TFTEQKSSEF EFRPPASNMV YAELGKHRSE PPVQFQGQGH  180
GSSHSPSSIS DAAGSSSELS RPTPPRQMTS TSSDIPAGSD QDESIQTSQN DSRGSTPSIL  240
ADDGYNWRKY GQKHVKGSEF PRSYYKCTHP NCEVKKLFER SHDGQITDII YKGTHDHPKP  300
QPGRRNSGGL GMAAQDERLD KYPSSTGRDV KKLFERSHDG QITDIIYKGT HDHPKPQPGR  360
RNSGGLGMAA QDERLDKYPS STGRDEKGSG VYNLSHPNEQ AGNPEIPPIA ATDDGGEAAA  420
SNRNKDDPED DDPFSKRRRM DAAMEITPLV KPIREPRVVV QTLSEVDILD DGYRWRKYGQ  480
KVVRGNPNPR SYYKCTAAGC PVRKHVERAS HDPKAVITTY EGKHNHDVPT SKSSSNHDIQ  540
PRFRPDETDT ISLSLGVGIS SDGPNHTSNE HQHQNQQLVN QTHPNGVNFR FVHANHPMPS  600
SYYASLNSAM NQYGSRETKN ETQNGDISSL NHSSYPYPPN IGRIQSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36240529877Probable WRKY transcription factor 4
2lex_A3e-36240529877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g017590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4258370.0AF425837.1 Arabidopsis thaliana WRKY transcription factor 20 (WRKY20) mRNA, complete cds.
GenBankAJ6304790.0AJ630479.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g26640D.
GenBankAY0458920.0AY045892.1 Arabidopsis thaliana unknown protein (At4g26640) mRNA, complete cds.
GenBankAY1504360.0AY150436.1 Arabidopsis thaliana unknown protein (At4g26640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438718.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
RefseqXP_010438719.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLR0GYJ60.0R0GYJ6_9BRAS; Uncharacterized protein
STRINGXP_010438719.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein