PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g018910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 584aa    MW: 65539 Da    PI: 9.161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g018910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00057091223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    kC++C++ F ++ n++rH r+H
  Csa11g018910.1 70 KCEKCNMEFCSPVNYRRHHRMH 91
                    7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.2016996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MPVCSLNSME LVKQDGNDSL DMLIRRAVGK DPFLSFPRPE NTPVQLFQLL HTLERPGWPL  60
LTPLKIQMQK CEKCNMEFCS PVNYRRHHRM HRRQRKHEKD SGKERDALGA FWNKLSAIDA  120
KEILSLKSMM LEDVPGVSVE SGLMSLIEKP GYTALPQYYL RAGSGILDIL QARPSSFPVS  180
SQELFSILDD ASEKTFLCNE AAPMQKYIFD GEIGKNVLEP KNVVACASFL LEQRLIKAWL  240
ADKDAEALRC QNLLVEEEEA ARRRQAELLE RKKRKKLRQK EQREKDQKKD AKEDESTTSE  300
EQQYPAESSS QLPVASDSEA QRPDSIPIDA SSSLEDPQVL ETNDGRNGEC QAPMVDDDGF  360
GNGQYMERQN GRRSNGFHAN HAPKLGGMRK NGINRDTRVN TAKVWSRKSV NPKSISQHAA  420
VTQLDQTRNS ELRIGAFSLT IPKSGLSGVH NQTKCSEEDR RTKTVEVKPT SEQATVKIWR  480
PVSSQGRKVS AVHENADKGD KNSNSTAAEV KTTHHHISVQ FNNHKAKEFL AKRWKEATSG  540
EHVTLVLSQE TDISGNNTHE SSNGVITARP KPRMKPEKGT KVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261275RRRQAELLERKKRKK
2269276ERKKRKKL
3271275KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g018910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0812940.0AY081294.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438854.10.0PREDICTED: uncharacterized protein LOC104722404
RefseqXP_019088617.10.0PREDICTED: uncharacterized protein LOC104722404
TrEMBLR0GHK90.0R0GHK9_9BRAS; Uncharacterized protein
STRINGXP_010438854.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.10.0C2H2-like zinc finger protein