PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g019130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 159aa    MW: 18678.9 Da    PI: 10.0521
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g019130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g+lKKA+ELSvLCda+va i+fs++g+ly+++s
  Csa11g019130.1  9 KRIENVTSRQVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQNGRLYDFAS 59
                    79***********************************************86 PP
2K-box462.2e-1683143969
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                      +e+  ++l++e+a +  +ie Lq   R+++G+dL+ +s++eL++L  q+eksl+ +Rs+K
  Csa11g019130.1  83 RKEQYVQELKKEMAVMMHKIEHLQLHCRKVMGQDLDLCSVEELKELTIQIEKSLTIVRSRK 143
                     578889******************999*********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.539161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-31373IPR002100Transcription factor, MADS-box
CDDcd002651.02E-39370No hitNo description
PRINTSPR004049.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003197.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.7E-1487143IPR002487Transcription factor, K-box
PROSITE profilePS512979.388158IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MLRGKIEIKR IENVTSRQVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ NGRLYDFASS  60
DMKKIMERYE IYRREAFGEE RLRKEQYVQE LKKEMAVMMH KIEHLQLHCR KVMGQDLDLC  120
SVEELKELTI QIEKSLTIVR SRKGFSEGLS YCERFKSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-20372271Myocyte-specific enhancer factor 2A
3mu6_B3e-20372271Myocyte-specific enhancer factor 2A
3mu6_C3e-20372271Myocyte-specific enhancer factor 2A
3mu6_D3e-20372271Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g019130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893094e-59AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445133.14e-98PREDICTED: MADS-box protein AGL71-like
SwissprotQ9FLH51e-62AGL72_ARATH; MADS-box protein AGL72
TrEMBLR0F2Y05e-89R0F2Y0_9BRAS; Uncharacterized protein
STRINGXP_010445133.11e-97(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88051235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.22e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]