PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g019370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 644aa    MW: 70840.1 Da    PI: 9.9104
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g019370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731041.2e-32138238198
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 
                     k+fqrl+se+De++lLqG++df++++g +p++d daf+++vkk i+f+++ksq+v+K++rLKkKf + vk+     ks++e++f+k+ ++k+fel
  Csa11g019370.1 138 KMFQRLFSETDEVALLQGVLDFTSTKG-DPYEDSDAFCSYVKKLIDFDATKSQIVTKLQRLKKKFGNTVKNaakkGKSEDEVKFAKDIERKAFEL 231
                     58*************************.9************************************999888766688999*************** PP

          DUF573  92 skkiWgs 98 
                     ++kiWgs
  Csa11g019370.1 232 ARKIWGS 238
                     *****95 PP
2DUF5731041.2e-32417517198
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 
                     k+fqrl+se+De++lLqG++df++++g +p++d daf+++vkk i+f+++ksq+v+K++rLKkKf + vk+     ks++e++f+k+ ++k+fel
  Csa11g019370.1 417 KMFQRLFSETDEVALLQGVLDFTSTKG-DPYEDSDAFCSYVKKLIDFDATKSQIVTKLQRLKKKFGNTVKNaakkGKSEDEVKFAKDIERKAFEL 510
                     58*************************.9************************************999888766688999*************** PP

          DUF573  92 skkiWgs 98 
                     ++kiWgs
  Csa11g019370.1 511 ARKIWGS 517
                     *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-26140237IPR007592Protein of unknown function DUF573
PfamPF045041.6E-26419516IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAPKKAELID NPPVVSSSEE EESGSSGDES DSSAEVSRKD VSSSKKPESD SEGESESESD  60
SEPEPAKKPV VATKAKSDAA SGSAAALPES SKSKRPLKEA EPEANKKLKI SETEHVVKTA  120
KANDNESSKK ISKEDAKKMF QRLFSETDEV ALLQGVLDFT STKGDPYEDS DAFCSYVKKL  180
IDFDATKSQI VTKLQRLKKK FGNTVKNAAK KGKSEDEVKF AKDIERKAFE LARKIWGSNG  240
VMTSKSRKKI GGTTPSAATK DMKLVAHSTP KKPQEGQRPE KTEGKAGLSI GREIALFFNA  300
ENSSSCCLDE FTITAVWKKV ADGAKKTQVE EKWKKLXKKE KKKTLSPLSD LDGTEESGTN  360
RQPTCGLFDS KSKRPLKEAE PEANKKLKIS ETEHVVKTAK ANDNESSKKI SKEDAKKMFQ  420
RLFSETDEVA LLQGVLDFTS TKGDPYEDSD AFCSYVKKLI DFDATKSQIV TKLQRLKKKF  480
GNTVKNAAKK GKSEDEVKFA KDIERKAFEL ARKIWGSNGV MTSKSRKKIG GTTPSAATKD  540
MKLVAHSTPK KPQEGQRPEK TEGKAGLSIG REIALFFNAE NSSSCCLDEF TITAVWKKVA  600
DGAKKTQVEE KWKKLKAKQV ELCLQRTELV NETAKMIFKA YES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333342KKLXKKEKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g019370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438914.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like isoform X2
RefseqXP_010438915.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like isoform X1
RefseqXP_019088242.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like isoform X2
SwissprotQ9SB421e-132STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLR0F5W31e-154R0F5W3_9BRAS; Uncharacterized protein
STRINGXP_010438916.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-133DNA-binding storekeeper protein-related transcriptional regulator