PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g019590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 307aa    MW: 35137 Da    PI: 8.6417
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g019590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05147166120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     + C++C+k+F+r  n++ H+
  Csa11g019590.1 147 FACSICSKTFNRYNNMQMHM 166
                     78*****************9 PP
2zf-C2H211.10.0013234256123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cgk    k + ++H +++
  Csa11g019590.1 234 FSCGKCGKALAVKGDWRTHEKNC 256
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.15E-9126170No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5147166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17147169IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45147174IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
SMARTSM00355100197229IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.6E-5219254No hitNo description
Gene3DG3DSA:3.30.160.607.9E-4220254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190234254IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642254287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKTRDAISRS NHHQSQMNML ERSLFLYQPQ LNTSIQCLPL LNKLMENKSR QALDDIKEES  60
KDDVVTLQIG FPNYHRGNSA EEDDSDTTSD HQKKPIKKEI IDDGVVLMKK RRKMKYDEEV  120
IDSDMEVCGK RFWIPSPAQI HVGPMQFACS ICSKTFNRYN NMQMHMWGHG SEFRKGADSL  180
KGTSTTQPAA ILRLPCYCCT EGCKNNINHP RSKPLKDFRT LQTHYKRKHG SKPFSCGKCG  240
KALAVKGDWR THEKNCDKLW YCICGSDFKH KRSLKDHIRS FGSGHAPHPS LSFDGFEEDT  300
ECVTTE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g019590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544480.0AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAK1188510.0AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBankAY0909180.0AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438939.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLR0II760.0R0II76_9BRAS; Uncharacterized protein
STRINGXP_010438939.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]