PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g023540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 155aa    MW: 17416.8 Da    PI: 5.775
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g023540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.49.6e-2851041100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +Ca C+vl++ C ++C++  yfp+++  +f+ v+++FGa+nv ++l++l+ e+ r++a++sl+y Aear rdP  G +g++++ ++ l+ +++++
  Csa11g023540.1   5 RCAICRVLKQICDPNCIYKAYFPSNN-TRFKDVNQIFGAENVANILNSLESEDqRKIAANSLCYAAEARRRDPFPGILGMVQHHESILNDVEQDI 98 
                     6**********************998.89********************66554****************************************9 PP

          DUF260  95 allkee 100
                     + +++e
  Csa11g023540.1  99 KFAENE 104
                     998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.5164105IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-255101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MNSNRCAICR VLKQICDPNC IYKAYFPSNN TRFKDVNQIF GAENVANILN SLESEDQRKI  60
AANSLCYAAE ARRRDPFPGI LGMVQHHESI LNDVEQDIKF AENELKTNVG PDQVPKYFDI  120
PIQDGFLTTS TSLNSCIEEI KRLTTVQKIN ICNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-17610512111LOB family transfactor Ramosa2.1
5ly0_B2e-17610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g023540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086254.19e-87PREDICTED: LOB domain-containing protein 32-like
SwissprotO496511e-52LBD32_ARATH; LOB domain-containing protein 32
TrEMBLR0GTP61e-67R0GTP6_9BRAS; Uncharacterized protein
STRINGXP_010445199.17e-99(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.15e-55LOB domain-containing protein 32