PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g024150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 541aa    MW: 59142.6 Da    PI: 5.8413
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g024150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30298356259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  Csa11g024150.1 298 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgACPVRKQVQRCAEDRSILITTYEGNHNHP 356
                     7****************************99***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-33282358IPR003657WRKY domain
SuperFamilySSF1182902.48E-27290358IPR003657WRKY domain
PROSITE profilePS5081128.908292358IPR003657WRKY domain
SMARTSM007741.6E-35297357IPR003657WRKY domain
PfamPF031062.6E-26299356IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MFRFPVSLGG SRDEARHDQI TPLDEHRVVV DEVDFFSEKR DRVSREDIND DEDEEANKVH  60
VKMENSRVEE NDRSRDVNIG LKLLTANTGS DESTVDDGLS MDMEDKRAKI ENAQLQEELK  120
KMKIENQRLR DMLSQATNNF NSLQMQLVAV MRQQEQRNSS QEHLLATEGK AEGRKRQELH  180
TMVPRQFMDL GPSSGATEHE AEVLSEERTM IHSGSPPSLL ESSNLRENGK RLLGREESPE  240
ESESNAWGNP NKVPKHNSSS SNNNNNGNGN VIDQSAAEAT MRKARVSVRA RSEAPMISDG  300
CQWRKYGQKM AKGNPCPRAY YRCTMAGACP VRKQVQRCAE DRSILITTYE GNHNHPLPPA  360
AMAMASTTTA AASMLLSGSM SSQDGLMNPT NLLARAILPC SSSMATISAS APFPTITLDL  420
TNSPNGNNPN MTTNNPLMQF VQRPGFNPAV LPQVVGQALY YNQQQSKFSG LQLPAQPLQI  480
PATSSVSESV SAASAAIASD PNFAAALAAA ITSIMNGSSH QNNNTNNNNN VATSNGDNRQ  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-23284360176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00447DAPTransfer from AT4G22070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g024150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526480.0AY052648.1 Arabidopsis thaliana WRKY transcription factor 31 (WRKY31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439371.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ93WT00.0WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLR0GHU50.0R0GHU5_9BRAS; Uncharacterized protein
STRINGXP_010439371.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.10.0WRKY DNA-binding protein 31