PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g024760.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LSD

Protein Properties

Length: 95aa MW: 10418.1 Da PI: 9.0301

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g024760.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.4	2e-12	6	29	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr lLsY rG++ V+C++C+t Csa11g024760.1 6 CGSCRRLLSYLRGSKQVKCSCCQT 29 ***********************8 PP
2	zf-LSD1	46.8	4.8e-15	44	68	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++C+ lL+YP+GApsVRC++C+ + Csa11g024760.1 44 CNNCKQLLMYPYGAPSVRCSSCNSI 68 **********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	6.9E-17	3	33	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.3E-8	6	29	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	8.2E-12	41	69	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.6E-13	44	68	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MAQMVCGSCR RLLSYLRGSK QVKCSCCQTA NLVLEANQVG QVTCNNCKQL LMYPYGAPSV 60 RCSSCNSITD IRENNKRPPW SEQQGPLKSL SSVR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g024760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT011760	1e-113	BT011760.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
GenBank	BT012384	1e-113	BT012384.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010439449.1	1e-63	PREDICTED: protein LOL2
Swissprot	O65426	1e-56	LOL2_ARATH; Protein LOL2
TrEMBL	D7MER7	9e-56	D7MER7_ARALL; Uncharacterized protein
STRING	XP_010439449.1	4e-63	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13611	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	5e-59	lsd one like 2