PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g025410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 261aa    MW: 29308.4 Da    PI: 8.9314
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g025410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.16e-362278561
          zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     ++c+rC s+ntkfCy+nny +sqPryfCk+CrryWt+GGalrnvP+Ggg rk k++
  Csa11g025410.1 22 PRACARCSSNNTKFCYFNNYRMSQPRYFCKNCRRYWTHGGALRNVPIGGGYRKAKQA 78
                    578**************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-212077IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.4282377IPR003851Zinc finger, Dof-type
PfamPF027012.1E-302377IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102561IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDNLIVFADE DNQQLNGVKP PPRACARCSS NNTKFCYFNN YRMSQPRYFC KNCRRYWTHG  60
GALRNVPIGG GYRKAKQARI DKSLVSRMVS SDIQHVTPDI QQVNHQPFSY VQENNEFIGS  120
FGASSSFVAA ATVGNHFGSL SDIRSGMVPN VPPSSQSFQP NHRLDFQDGS FEHDYYNVVS  180
STNPFVNQSI GGGYVDNYNG YGMEQYKWNQ SFNNTLTMNH NASTSGSRGS DMTMMNNDNK  240
NKIRYNSVIK HPCHLEKHGP *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00446DAPTransfer from AT4G21080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g025410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439522.10.0PREDICTED: dof zinc finger protein DOF4.5-like
SwissprotO495503e-76DOF45_ARATH; Dof zinc finger protein DOF4.5
TrEMBLR0GXA81e-105R0GXA8_9BRAS; Uncharacterized protein
STRINGXP_010439522.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21080.14e-70Dof-type zinc finger domain-containing protein