PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g025480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 247aa    MW: 27455.4 Da    PI: 8.0747
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g025480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.71.9e-362176560
          zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                     + c+rC s ntkfCy+nnys+sqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+
  Csa11g025480.1 21 PQVCARCSSFNTKFCYFNNYSMSQPRYFCKECRRYWTQGGTLRNVPVGGGCRKPKR 76
                    678**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-22876IPR003851Zinc finger, Dof-type
PfamPF027014.6E-312276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.4282276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDNVNVLAKG ENQLNGEKPP PQVCARCSSF NTKFCYFNNY SMSQPRYFCK ECRRYWTQGG  60
TLRNVPVGGG CRKPKRPRIE QSSVSQVAFF EHQPINHQPF RLVHENNESV GLFGGSSSPA  120
AVAAVLGKHL GYLAELRGVT NVPQVRGHRP IVLDRLDFGE DSFQQDYYDV GNDLIGNPFI  180
NQSIGGGYVN NHNTCFINQV DLHKWNQSIN NTMNVNHEAS SSGSRGSSDT ETNSNNGNKD  240
QKHLFD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g025480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439530.10.0PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA91e-79DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLD7MFF83e-96D7MFF8_ARALL; Dof-type zinc finger domain-containing protein
STRINGXP_010439530.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.15e-80Dof-type zinc finger domain-containing protein