PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g027640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 1050aa    MW: 119471 Da    PI: 4.8244
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g027640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.5e-12899940143
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      r+ WT+eEd++l  av ++G  +W ++a+ ++ gRt+ qc +r
   Csa11g027640.1 899 RKEWTAEEDDQLRAAVDLFGETDWQSVANVLQ-GRTGPQCSNR 940
                      789*****************************.*******887 PP
2Myb_DNA-binding34.54.7e-11959992337
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                      +W+ eEd++l+ av+++G+++W +Ia+ ++ gRt+
   Csa11g027640.1 959 KWSSEEDKRLKVAVTLFGTKNWPKIAQFVP-GRTE 992
                      8*****************************.**96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.710.101.6E-1244185No hitNo description
SuperFamilySSF546952.2E-1245188IPR011333SKP1/BTB/POZ domain
PfamPF006512.9E-958186IPR000210BTB/POZ domain
SMARTSM002257.8E-1760189IPR000210BTB/POZ domain
PROSITE profilePS5009714.56360139IPR000210BTB/POZ domain
PfamPF119002.5E-13224267IPR024228Regulatory protein NPR, central domain
SuperFamilySSF484032.49E-13268367IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.9E-13269362IPR020683Ankyrin repeat-containing domain
CDDcd002043.46E-13269361No hitNo description
PfamPF127962.7E-6272351IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.335290364IPR020683Ankyrin repeat-containing domain
SMARTSM00248130290320IPR002110Ankyrin repeat
PROSITE profilePS500889.217324352IPR002110Ankyrin repeat
SMARTSM002480.91324353IPR002110Ankyrin repeat
PfamPF123133.2E-79366571IPR021094NPR1/NIM1-like, C-terminal
SMARTSM0071724778842IPR001005SANT/Myb domain
PROSITE profilePS500906.144779840IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-5781847IPR009057Homeodomain-like
SuperFamilySSF466895.26E-12824890IPR009057Homeodomain-like
PROSITE profilePS500907.933841893IPR017877Myb-like domain
SMARTSM007170.0012845895IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-8848899IPR009057Homeodomain-like
SuperFamilySSF466897.9E-16878940IPR009057Homeodomain-like
PROSITE profilePS5129416.318894954IPR017930Myb domain
SMARTSM007176.9E-8898952IPR001005SANT/Myb domain
PfamPF002491.9E-10899940IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-12900953IPR009057Homeodomain-like
CDDcd001674.62E-9901940No hitNo description
SuperFamilySSF466891.1E-8952992IPR009057Homeodomain-like
PROSITE profilePS500907.085952993IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-9955992IPR009057Homeodomain-like
SMARTSM007170.0889561008IPR001005SANT/Myb domain
PfamPF002499.3E-9959992IPR001005SANT/Myb domain
CDDcd001671.63E-7959992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    Send to blast
MAATAMEPSS SISFTSSHLS NALPLVTTNH HAAANLEAVS LIKLSSNLEQ LLTNPDCDYT  60
DAEIIIEEEA NPVSVHRCLL AARSKFFLDL FKKDKESSGK SEKKPKYQMK DLLPYGNVGR  120
EAFLHFLNYI YTGRLKSFPV EVSTCVDTVC AHDSCKPAID FAVELMYASY VFQMPELVSS  180
LQRRLCNYVE KSLVENVIPI LFVAFHCDLT QLLDQCIERV ARSDLDRFCI EKELPSEVSE  240
KIKQLRLKSM NVSEVADKSL ERTGKVLKAL DSDDLELVKL LLTESDITLD QANGLHYAVA  300
YSDPKVVTEV LDLNMADVNF RNSRGYTVLH FAAMRREPTI IISLIQKGAN ASDFTFDGRS  360
AVNICRRLTM PKDYHTKNSR KEPSKDRLCI DILEREIRRN PLVSGDTPTC SHSMPEDLQM  420
RLLYLEKRVG LAQLFFPAEA DVAMDFANVE GTSECTGLVF PPPSNVTTGN LGQVDLNETP  480
YVQTKRMLTR MEALMKTVET GRRYFPSCSE VLDKYMEEYM DEDIPDMSHP EKGSVKERRQ  540
KRMRYNELKN DVKKAYSKDK IARSCLSDSS PDSSLREIMN SREGLYVADD DDDDDDDDDD  600
DDDDDDEEDE SEDLEDLRRA LPLDDLESED EDFEMIRSIK RELVSMDEDE DGAFEALGVI  660
RKRFSAYANS DQGKSVVTVP DSDTSVEPLD HLVQTCQSES SSFPEAAKAF VDAIRTNRSY  720
QSLLRRKLSK IEATIEQNEK HRRNDNDKMT SPLMLGPPEN ACVADYRMAL EKYPVSEDRR  780
SWTTKENENL AKGLKQQVQN TLIREALEQS RQFLPKVNWE QLDIKNRSAA ECEARWMSSE  840
DPLINNGPWT VAEDNHIRLI TQNKGFTDWL DIAVSLGTNR TPFQCLVRYQ RSLNPYILRK  900
EWTAEEDDQL RAAVDLFGET DWQSVANVLQ GRTGPQCSNR SVIFIWKKSL HPSGTRNRKW  960
SSEEDKRLKV AVTLFGTKNW PKIAQFVPGR TERPDLVVGD FLALTEISLE PERKARQKKK  1020
ADAECEVEAV CADTERQPKK RRKGLERCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-217799926149MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-217799926149MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110381042KKRRK
Functional Description ? help Back to Top
Source Description
UniProtMay act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Involved in the regulation of basal defense responses against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways. {ECO:0000250, ECO:0000269|PubMed:15634206, ECO:0000269|PubMed:17076807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g027640.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated following pathogen challenge or salicylic acid (SA) treatment, and down-regulated by methyl jasmonic acid (MeJA) treatment. {ECO:0000269|PubMed:15634206, ECO:0000269|PubMed:17076807}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7859510.0AY785951.1 Arabidopsis thaliana ankyrin repeat BTB/POZ domain-containing protein (NPR4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439667.10.0PREDICTED: regulatory protein NPR4 isoform X2
SwissprotQ5ICL90.0NPR4_ARATH; Regulatory protein NPR4
TrEMBLR0F8U10.0R0F8U1_9BRAS; Uncharacterized protein
STRINGXP_010439666.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-140myb domain protein 4r1
Publications ? help Back to Top
  1. Gingerich DJ, et al.
    Cullins 3a and 3b assemble with members of the broad complex/tramtrack/bric-a-brac (BTB) protein family to form essential ubiquitin-protein ligases (E3s) in Arabidopsis.
    J. Biol. Chem., 2005. 280(19): p. 18810-21
    [PMID:15749712]
  2. Eulgem T, et al.
    EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels.
    Plant J., 2007. 49(5): p. 829-39
    [PMID:17253987]
  3. Bergeault K,Bertsch C,Merdinoglu D,Walter B
    Low level of polymorphism in two putative NPR1 homologs in the Vitaceae family.
    Biol. Direct, 2010. 5: p. 9
    [PMID:20137081]
  4. Fu ZQ, et al.
    NPR3 and NPR4 are receptors for the immune signal salicylic acid in plants.
    Nature, 2012. 486(7402): p. 228-32
    [PMID:22699612]
  5. Moreau M,Tian M,Klessig DF
    Salicylic acid binds NPR3 and NPR4 to regulate NPR1-dependent defense responses.
    Cell Res., 2012. 22(12): p. 1631-3
    [PMID:22785561]
  6. Kaltdorf M,Naseem M
    How many salicylic acid receptors does a plant cell need?
    Sci Signal, 2013. 6(279): p. jc3
    [PMID:23757021]
  7. Kuai X,MacLeod BJ,Després C
    Integrating data on the Arabidopsis NPR1/NPR3/NPR4 salicylic acid receptors; a differentiating argument.
    Front Plant Sci, 2015. 6: p. 235
    [PMID:25914712]
  8. Ding Y,Dommel M,Mou Z
    Abscisic acid promotes proteasome-mediated degradation of the transcription coactivator NPR1 in Arabidopsis thaliana.
    Plant J., 2016. 86(1): p. 20-34
    [PMID:26865090]
  9. Rong D,Luo N,Mollet JC,Liu X,Yang Z
    Salicylic Acid Regulates Pollen Tip Growth through an NPR3/NPR4-Independent Pathway.
    Mol Plant, 2016. 9(11): p. 1478-1491
    [PMID:27575693]
  10. Ding Y, et al.
    Opposite Roles of Salicylic Acid Receptors NPR1 and NPR3/NPR4 in Transcriptional Regulation of Plant Immunity.
    Cell, 2018. 173(6): p. 1454-1467.e15
    [PMID:29656896]
  11. Yang Q,Zhang M,Zheng J,Jia Z
    AtNPR4 from Arabidopsis thaliana: expression, purification, crystallization and crystallographic analysis.
    Acta Crystallogr F Struct Biol Commun, 2019. 75(Pt 1): p. 67-72
    [PMID:30605128]