PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g027680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 114aa    MW: 13665.7 Da    PI: 10.1903
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g027680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind58.42e-18288598
                    HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
    HSF_DNA-bind  5 klyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
                    ++y+++e+++ + +isw +++nsfv+++ eef ++ + + F  ++f+ F   L  YgF+++k+ +++        e+ h+ F +g+ e ++++ 
  Csa11g027680.1  2 RIYTLVENPASDPIISWGKDNNSFVIWNLEEFIRRYIVHKFDCNRFSQFHADLRHYGFRRIKKGSGE-------LEYGHEDFVRGQPERMKTLT 88
                    68***************************************************************99.......*************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.9E-16190IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-17287IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.22E-20287IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.1E-21284IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MRIYTLVENP ASDPIISWGK DNNSFVIWNL EEFIRRYIVH KFDCNRFSQF HADLRHYGFR  60
RIKKGSGELE YGHEDFVRGQ PERMKTLTLK AWRKSRAKFE VKEAAEEMRR LQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g027680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445269.21e-80PREDICTED: heat stress transcription factor A-1-like
TrEMBLR0GL957e-52R0GL95_9BRAS; Uncharacterized protein
STRINGXP_010445269.16e-80(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.17e-35HSF family protein