PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g027710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 137aa    MW: 15853.3 Da    PI: 10.1036
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g027710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind51.72.5e-16131092102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HH.HHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvldee.efakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     F   +ye++ed++ + lisws+++n fv++ +e ++ +k+L   F  ++++ F+  L  YgF++vk++ ++      + eF+++ F kg+ e l+
  Csa11g027710.1  13 FYVDIYELVEDPSSDPLISWSKRNNGFVMCSQEeRIRSKILL-PFYCDKLSEFLSELSYYGFRRVKTKAGS----GVVLEFRNEDFVKGQPERLK 102
                     88899****************999***999865157777776.577899********************98....789***************** PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     ++  k+s
  Csa11g027710.1 103 DMMIKAS 109
                     9877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-279107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.6E-1712104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-1912104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.9E-71336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-1513104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-76476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAEKYPNGVM GSFYVDIYEL VEDPSSDPLI SWSKRNNGFV MCSQEERIRS KILLPFYCDK  60
LSEFLSELSY YGFRRVKTKA GSGVVLEFRN EDFVKGQPER LKDMMIKASR KRRAKSRAQQ  120
AAKDAVDRLQ LQRLRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g027710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439679.12e-96PREDICTED: heat stress transcription factor A-4b-like
TrEMBLQ8L7H26e-51Q8L7H2_ARATH; Winged-helix DNA-binding transcription factor family protein
STRINGXP_010439679.16e-96(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.12e-51HSF family protein