PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g027730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 110aa    MW: 12646.6 Da    PI: 10.5129
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g027730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind23.91.1e-071346235
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHH CS
    HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvldeee 35
                    F  k+ye++ed++ + lisws+++n fv++ +ee
  Csa11g027730.1 13 FYVKIYELVEDPSSDPLISWSKRNNGFVICSQEE 46
                    999**************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.8E-11980IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.7E-71146IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-131277IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-41346IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MAEKYPNGLM GSFYVKIYEL VEDPSSDPLI SWSKRNNGFV ICSQEERIRI KKKAGSGVLE  60
FRNEDFVRGQ PERLKDMMLK ASRKRRAKFR AQQAAKDAVD RLQLQSLHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g027730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449325.25e-62PREDICTED: heat stress transcription factor A-4a-like
TrEMBLQ8L7H24e-34Q8L7H2_ARATH; Winged-helix DNA-binding transcription factor family protein
STRINGXP_010449325.14e-62(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.17e-35HSF family protein