PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g028560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 395aa    MW: 45131.3 Da    PI: 5.0568
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g028560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34161072102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l+++
  Csa11g028560.1  16 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQPHLMKN 101
                     9**************************************************************99988.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Csa11g028560.1 102 IRRRKP 107
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6212105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.1E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDENNHGGSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK  60
HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK NIRRRKPVHS HSLPNLQAQQ  120
NLLTDSERVR MKNQIERLTK EKEGLLEELQ KQDEEREGFE MQVKELKERL QHMEKRQKTM  180
VSFVSQVLEK PGLALNLSPC VPEPNERKRR FPRIGFLPDE PMMEENQTCV VVREEGSTSP  240
SSHTTEQQVE QLGSSIAIWE NLVSDSCESM LQTRSMMTLD VDDSSTCPES PPLSCIQLSI  300
DKRPKSPPSP RIIDMNSEPD VTKEQNNTVA AAAAPPPSVA GANDVFWQQF FSENPGSTEQ  360
RDKAEDRSEK SWWNSRNVNT ITEQLGHLTS SERS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231110524129Heat shock factor protein 1
5d5v_B2e-231110524129Heat shock factor protein 1
5d5v_D2e-231110524129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g028560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1255120.0AY125512.1 Arabidopsis thaliana AT4g18880/F13C5_50 mRNA, complete cds.
GenBankBT0010490.0BT001049.1 Arabidopsis thaliana At4g18880/F13C5_50 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439797.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_010439798.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_010439799.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_010439801.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_010439802.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_010439803.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLR0GWP50.0R0GWP5_9BRAS; Uncharacterized protein
STRINGXP_010439797.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.10.0heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]