PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g028620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 189aa    MW: 22451.9 Da    PI: 9.2901
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g028620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind36.41.4e-1125109298
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k y +++d++++ +isw  n +sf+v+++ e  +++Lp+      f   +R   +YgFkkv ++ +         e++ + F kg+ ellek
  Csa11g028620.1  25 FMRKAYAMVDDPSTDLIISWGFNRDSFIVWHPPECYRDLLPRLLGVPDF---YR-FRLYGFKKVVSSVH--------LEYARDDFVKGRPELLEK 107
                     9********************999******************9876665...55.589******99985........6****************9 PP

                     XX CS
    HSF_DNA-bind  97 ik 98 
                     i 
  Csa11g028620.1 108 IG 109
                     96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.5E-1518105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-1521111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-1422108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.0E-1125109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDGDNNNHGA PHPVSIEQKK MCLDFMRKAY AMVDDPSTDL IISWGFNRDS FIVWHPPECY  60
RDLLPRLLGV PDFYRFRLYG FKKVVSSVHL EYARDDFVKG RPELLEKIGQ SFLEEREKKM  120
KPLRDAMRNC KNMDEERLVT KEWMATLERE RRVQVDKDFL KDADLLLLRI SKYKERRAKS  180
FTRFGGYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g028620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445286.11e-138PREDICTED: heat stress transcription factor A-4a-like
TrEMBLR0H2A26e-75R0H2A2_9BRAS; Uncharacterized protein
STRINGXP_010445286.11e-138(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-19heat shock transcription factor A1D