PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g030530.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 564aa MW: 62749.6 Da PI: 5.967

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g030530.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.7	4.8e-27	323	376	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++++WtpeLH++Fv+aveqL G+e+A+P++ilelmkv+ Lt+++v+SHLQkYR++ Csa11g030530.1 323 KKVDWTPELHKKFVQAVEQL-GIEQAIPSRILELMKVNTLTRHNVASHLQKYRMH 376 689***************.******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	3.13E-6	36	119	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	4.3E-4	70	119	No hit	No description
PROSITE profile	PS51294	15.915	319	378	IPR017930	Myb domain
SuperFamily	SSF46689	1.7E-18	321	379	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-26	321	378	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	323	376	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-8	325	374	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MVITANDLSK WENFPKGLKV LLLLNGDDDG DGFSAAETRS KLESTDYIVT IFTDETEALS 60 AVFKNPESFH IAIVEVNTNA EKEGFKFLEA AKDLGAVEFL QKPLSPEKLK NIWQHVVHKA 120 FNDGGSKPVK ESVVSMLHLD TNMTIDEKDP APSTPQLKQV SRLGDCQENI NCSMENAFND 180 GGSKPVKESV VSMLHLDTNM TIDEKDPAPS TPQLKQVSRL GDCQENINCS MENVNSSTEK 240 DNMEDQDIGE SKSVDTTNRV LDDDKVVVKE ERGDSEKEEQ GETGDLESER TDSVNCHKKE 300 DDTKPVNKSS GTKNLSGSKT TRKKVDWTPE LHKKFVQAVE QLGIEQAIPS RILELMKVNT 360 LTRHNVASHL QKYRMHRKNS LPKDDHNQRW AHSRENQRPI QRNNNGFQQQ QRPVMAYPVW 420 GLPSIHHPPR AIPPLWPPPL HCAGQPPPWH WKPPYPTVNG NAWGCPVGPP ITGSYYTPNI 480 TAGGFQYTNG VETGFKMMPA TQPDEEMLDQ VVKEAISKPW MPLPLGLKPP SPESVLAELS 540 RQGIPAVPSS SSSFLINGSH RIR*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MVITANDLSK WENFPKGLKV LLLLNGDDDG DGFSAAETRS KLESTDYIVT IFTDETEALS  60
AVFKNPESFH IAIVEVNTNA EKEGFKFLEA AKDLGAVEFL QKPLSPEKLK NIWQHVVHKA  120
FNDGGSKPVK ESVVSMLHLD TNMTIDEKDP APSTPQLKQV SRLGDCQENI NCSMENAFND  180
GGSKPVKESV VSMLHLDTNM TIDEKDPAPS TPQLKQVSRL GDCQENINCS MENVNSSTEK  240
DNMEDQDIGE SKSVDTTNRV LDDDKVVVKE ERGDSEKEEQ GETGDLESER TDSVNCHKKE  300
DDTKPVNKSS GTKNLSGSKT TRKKVDWTPE LHKKFVQAVE QLGIEQAIPS RILELMKVNT  360
LTRHNVASHL QKYRMHRKNS LPKDDHNQRW AHSRENQRPI QRNNNGFQQQ QRPVMAYPVW  420
GLPSIHHPPR AIPPLWPPPL HCAGQPPPWH WKPPYPTVNG NAWGCPVGPP ITGSYYTPNI  480
TAGGFQYTNG VETGFKMMPA TQPDEEMLDQ VVKEAISKPW MPLPLGLKPP SPESVLAELS  540
RQGIPAVPSS SSSFLINGSH RIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-16	322	378	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g030530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF385725	0.0	AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds.
GenBank	AY143963	0.0	AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010439912.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X1
Refseq	XP_010439913.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X1
Refseq	XP_010439915.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X2
Swissprot	Q6LA43	0.0	APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBL	R0F4Q4	0.0	R0F4Q4_9BRAS; Uncharacterized protein
STRING	XP_010439912.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5746	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.6	0.0	ARR-B family protein

Publications ? help Back to Top
Gong L, et al. Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions. PLoS ONE, 2015. 10(5): p. e0128041 [PMID:26010543]