PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g030530.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 535aa    MW: 59485.1 Da    PI: 6.4647
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g030530.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.74.5e-27294347256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     ++++WtpeLH++Fv+aveqL G+e+A+P++ilelmkv+ Lt+++v+SHLQkYR++
  Csa11g030530.2 294 KKVDWTPELHKKFVQAVEQL-GIEQAIPSRILELMKVNTLTRHNVASHLQKYRMH 347
                     689*****************.********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011013.876188IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.22E-72990IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-830103No hitNo description
PROSITE profilePS5129415.915290349IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-26292349IPR009057Homeodomain-like
SuperFamilySSF466891.61E-18292350IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24294347IPR006447Myb domain, plants
PfamPF002496.0E-8296345IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MVITANDLSK WENFPKGLKV LLLLNGDDDG DGFSAAETRS KLESTDYIVI STDHCITTTM  60
KCIALGAVEF LQKPLSPEKL KNIWQHVVHK AFNDGGSKPV KESVVSMLHL DTNMTIDEKD  120
PAPSTPQLKQ VSRLGDCQEN INCSMENAFN DGGSKPVKES VVSMLHLDTN MTIDEKDPAP  180
STPQLKQVSR LGDCQENINC SMENVNSSTE KDNMEDQDIG ESKSVDTTNR VLDDDKVVVK  240
EERGDSEKEE QGETGDLESE RTDSVNCHKK EDDTKPVNKS SGTKNLSGSK TTRKKVDWTP  300
ELHKKFVQAV EQLGIEQAIP SRILELMKVN TLTRHNVASH LQKYRMHRKN SLPKDDHNQR  360
WAHSRENQRP IQRNNNGFQQ QQRPVMAYPV WGLPSIHHPP RAIPPLWPPP LHCAGQPPPW  420
HWKPPYPTVN GNAWGCPVGP PITGSYYTPN ITAGGFQYTN GVETGFKMMP ATQPDEEMLD  480
QVVKEAISKP WMPLPLGLKP PSPESVLAEL SRQGIPAVPS SSSSFLINGS HRIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16293349157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g030530.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3857250.0AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds.
GenBankAY1439630.0AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439912.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010439913.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010439915.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLR0F4Q40.0R0F4Q4_9BRAS; Uncharacterized protein
STRINGXP_010439912.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]