PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g030950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 329aa    MW: 37970.6 Da    PI: 10.4318
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g030950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like894.3e-28147197252
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                     pr+rWt +LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ 
  Csa11g030950.1 147 PRMRWTATLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQN 197
                     9*************************************************5 PP
2G2-like89.62.8e-28261310251
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     pr+rWt +LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ
  Csa11g030950.1 261 PRMRWTATLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQ 310
                     9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.38E-13144197IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-24145197IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-20147197IPR006447Myb domain, plants
PfamPF002494.8E-6148197IPR001005SANT/Myb domain
SuperFamilySSF466896.81E-13258311IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-24259310IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-20261311IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
LIEYTXKENQ EQEVERRLLG FRSKASDSDR DSSGNLIHAL QFTSSKSEPI KTGNNQEHNE  60
SLDQDLRSML MMRPIRGIPL YKNQVLDHYY YSSTSPSPFF FSEVNGQHAS RRIITNPNCS  120
YNLHHRNRRQ AQPQPPRFTA KRGVRAPRMR WTATLHAHFV HAVQLLGGHE RATPKSVLEL  180
MDVQDLTLAH VKSHLQNQVL DHYYYSSTSP SPFFFSEVNG QHASRRIITN PNCSYNLHHR  240
NRRQAQPQPP RFTAKRGVRA PRMRWTATLH AHFVHAVQLL GGHERATPKS VLELMDVQDL  300
TLAHVKSHLQ LIEYTFGRHH ISKDIYIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13148310452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13148310452Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-13148310351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-13148310351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-13148310351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-13148310351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13148310452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13148310452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13148310452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13148310452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13148310452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13148310452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g030950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486900.0AY048690.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI3 (KAN3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087402.11e-131PREDICTED: probable transcription factor KAN3
SwissprotQ941I21e-109KAN3_ARATH; Probable transcription factor KAN3
TrEMBLD7M9G71e-109D7M9G7_ARALL; Uncharacterized protein
TrEMBLR0H0S31e-109R0H0S3_9BRAS; Uncharacterized protein
STRINGXP_010439963.11e-129(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.15e-84G2-like family protein