PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g030950.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 309aa    MW: 34789.3 Da    PI: 9.5586
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g030950.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-31147200255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt +LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  Csa11g030950.2 147 PRMRWTATLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 200
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.66E-15144201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27145201IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-23147201IPR006447Myb domain, plants
PfamPF002491.1E-6148199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
LIEYTXKENQ EQEVERRLLG FRSKASDSDR DSSGNLIHAL QFTSSKSEPI KTGNNQEHNE  60
SLDQDLRSML MMRPIRGIPL YKNQVLDHYY YSSTSPSPFF FSEVNGQHAS RRIITNPNCS  120
YNLHHRNRRQ AQPQPPRFTA KRGVRAPRMR WTATLHAHFV HAVQLLGGHE RATPKSVLEL  180
MDVQDLTLAH VKSHLQMYRT IKSTEKPTTS SGQSDTCENG TQVNSGREAT DLQGLWNNSS  240
SEARFHLKAK ASSGVDISSN ENKWKNMDGR CSSNERLSSD SSSLTGTRRE TETPNLDFTL  300
ATPNLSAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g030950.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486900.0AY048690.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI3 (KAN3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434628.10.0PREDICTED: probable transcription factor KAN3
SwissprotQ941I20.0KAN3_ARATH; Probable transcription factor KAN3
TrEMBLR0F5I80.0R0F5I8_9BRAS; Uncharacterized protein
STRINGXP_010434628.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-148G2-like family protein