PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g032870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 233aa    MW: 27189.7 Da    PI: 10.4847
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g032870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.8e-142613799
                    EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    +++ ++g sWev +  +k+++  ++ ++GW++Fv++n L   +f++F+++g+++f  +v +f++
  Csa11g032870.1  2 KIRAQWGSSWEVGV--SKNPRFyFMEKSGWEKFVSDNALGHSEFITFTHKGKMRF--TVNIFKQ 61
                    67889*********..******555569********************9999999..9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.15162IPR003340B3 DNA binding domain
CDDcd100174.43E-9160No hitNo description
PROSITE profilePS5086312.266162IPR003340B3 DNA binding domain
PfamPF023621.3E-11161IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-13263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-12367IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-7144229IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.02152232IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-9169229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.163181232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKIRAQWGSS WEVGVSKNPR FYFMEKSGWE KFVSDNALGH SEFITFTHKG KMRFTVNIFK  60
QDGKEMMQTP SLIKTDHVED DKKEEVVVST QLSRGTRKRK LNLGKKKAEE SKNFTRTEKV  120
VKSQERFWRC LFILCCRIHR HHQKNIPQMA VFFLSLQKIP KDHRQKAKKA IFKIHHSNGR  180
KTWDVVVCLA EGYAFFSGGW AYVVKEYPIA VDDICTFKFI KPDELILVVS KP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g032870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885930.12e-85B3 domain-containing protein At2g16210
SwissprotQ5BPT71e-80Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7L1434e-84D7L143_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.3__3493__AT2G16210.17e-85(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.14e-74B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]