PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g034020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 665aa    MW: 72967.8 Da    PI: 6.6662
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g034020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like894.5e-28204257155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+++gLt+e+v+SHLQkYR+
  Csa11g034020.1 204 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNLPGLTRENVASHLQKYRI 257
                     79*******************.********************************7 PP
2Response_reg75.12.7e-25171251109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l    y +v+ +  +e al ll++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ +l+ +  G
  Csa11g034020.1  17 VLVVDDDPTCLMILERMLMTCLY-RVTKCNRAELALSLLRKNKhgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHG 109
                     89*********************.***************888889**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l +
  Csa11g034020.1 110 AVDYLIKPVRIEALKN 125
                     ************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.6E-1972656IPR017053Response regulator B-type, plant
SuperFamilySSF521723.7E-3414138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.9E-4014159No hitNo description
SMARTSM004481.8E-2915127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.62616131IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.5E-2217125IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.97E-2618130No hitNo description
PROSITE profilePS5129410.441201260IPR017930Myb domain
SuperFamilySSF466892.87E-19202261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-29203262IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23204257IPR006447Myb domain, plants
PfamPF002491.0E-8206256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MINPGSNSDP FPAGLRVLVV DDDPTCLMIL ERMLMTCLYR VTKCNRAELA LSLLRKNKHG  60
FDIVISDVHM PDMDGFKLLE HVGLEMDLPV IMMSADDSKS VVLKGVTHGA VDYLIKPVRI  120
EALKNIWQHV VRKKRNEWNV SEHSGGSIED TGGDRDRQQP REDADNNSSS VNEGNWRSSS  180
YRKRKEEEVD DQGDDKEDTS SLKKPRVVWS VELHQQFVAA VNQLGVDKAV PKKILEMMNL  240
PGLTRENVAS HLQKYRIYLR RLGGVSQHQG NMNHSFMNGQ DPNFGPLSSL NGFDLQALAV  300
AGQLPAQSLA QLQAAGLGRS SLIKPGMSSS PLVDQRSIFN FENPKIRFGD GHGQAINNGN  360
KQMSLLHGVP TGMEPKQFAG SSYMRVQQQI TGVRPGQNVQ SSGLMLPVAD HLPRGGPSML  420
PSLGQQQPMF STSVSRRSDL TGAVRNSIPE TNNRVLPATH SVFNNFPADL PQNNFPLASA  480
PGISIPVSAS YQEEVNSSDA KGGSSAATAG FGNPSYDIFN DFPQQQQHNS KLNDWDMRNI  540
GLVHSHQDTA AASAGFSTSE AYSSSSMQRK RRETDATVVT AHGQNQQPPS RSLNHLNHVF  600
MDGGSVRVKS ERVAETVTCP PATTLFHEQY HQEDLMSALL KQEGIPSVDN EFDFDGYSID  660
NIPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21200262163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g034020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4735210.0DQ473521.1 Arabidopsis thaliana ARR2 (ARR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440207.10.0PREDICTED: two-component response regulator ARR2-like isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLR0FAB40.0R0FAB4_9BRAS; Two-component response regulator
STRINGXP_010440207.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]