PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g037100.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

CPP

Protein Properties

Length: 689aa MW: 75474.1 Da PI: 5.7326

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g037100.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.9	3.1e-16	385	423	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Csa11g037100.1 385 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 423 689**********************************96 PP
2	TCR	51.1	2.7e-16	470	509	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkNk Csa11g037100.1 470 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNKF 509 589***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.2E-19	384	425	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.465	385	510	IPR005172	CRC domain
Pfam	PF03638	6.6E-12	387	422	IPR005172	CRC domain
SMART	SM01114	3.2E-17	470	511	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.3E-11	472	508	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MDTPQKSITQ IGTPNSKSRF EDSPVFNYIN SLSPIRPVKS IQNPHQFSSL NFTSPPSVFT 60 SPHLTSSHKE SRFFKTHNSS SSSSHPTNPT ESREDESTSN ESVSEEAAED TKDVNVDDAS 120 KPEETSVEKV LPQTNPGSPV ASPYGRDSTT ELSLVPYAPT QGGNGSCEGA GMELQPKMFD 180 NVQGKTETPD WESLISDASE LLIFDSPDAS EAFRCFMMQR ASTSEARFNT GVGMQTMQPD 240 ANKKLESSDA IPYEAVSFLH RGIRRRCLDF EMPGNKQTLS ENNTAACESS SRCIVPSIGL 300 HLNAIAMSSK DCKTNVTQDY SCSGNIQVGL QSSISSTLQE TLDQTENETR EDADQDVPVE 360 PALQELNLSS PKKKRVKLDS GEGDSCKRCN CKKSKCLKLY CECFAAGVYC IEPCSCIDCF 420 NKPIHEDTVL ATRKQIESRN PLAFAPKVIR NSDSVLETGD DASKTPASAR HKRGCNCKKS 480 NCLKKYCECY QGGVGCSINC RCEGCKNKFG RKDGSSIVDM EAEQEEENET SEKYRTAKSQ 540 QNTEFLMRKE ASSALPTTPT PIYRQELVEL LPFSSSKNRM PPPQSLLGGG SSSGIFNSQY 600 IRKPDIDLTQ SRMEKSFETV AEDRAEEMPE ILIHSPIPNI KSVSPNGKRV SPPHMESSSS 660 GSISGRRSGG RKLILQSIPS FPSLTPQH*

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MDTPQKSITQ IGTPNSKSRF EDSPVFNYIN SLSPIRPVKS IQNPHQFSSL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHNSS SSSSHPTNPT ESREDESTSN ESVSEEAAED TKDVNVDDAS  120
KPEETSVEKV LPQTNPGSPV ASPYGRDSTT ELSLVPYAPT QGGNGSCEGA GMELQPKMFD  180
NVQGKTETPD WESLISDASE LLIFDSPDAS EAFRCFMMQR ASTSEARFNT GVGMQTMQPD  240
ANKKLESSDA IPYEAVSFLH RGIRRRCLDF EMPGNKQTLS ENNTAACESS SRCIVPSIGL  300
HLNAIAMSSK DCKTNVTQDY SCSGNIQVGL QSSISSTLQE TLDQTENETR EDADQDVPVE  360
PALQELNLSS PKKKRVKLDS GEGDSCKRCN CKKSKCLKLY CECFAAGVYC IEPCSCIDCF  420
NKPIHEDTVL ATRKQIESRN PLAFAPKVIR NSDSVLETGD DASKTPASAR HKRGCNCKKS  480
NCLKKYCECY QGGVGCSINC RCEGCKNKFG RKDGSSIVDM EAEQEEENET SEKYRTAKSQ  540
QNTEFLMRKE ASSALPTTPT PIYRQELVEL LPFSSSKNRM PPPQSLLGGG SSSGIFNSQY  600
IRKPDIDLTQ SRMEKSFETV AEDRAEEMPE ILIHSPIPNI KSVSPNGKRV SPPHMESSSS  660
GSISGRRSGG RKLILQSIPS FPSLTPQH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-17	389	507	14	120	Protein lin-54 homolog
5fd3_B	8e-17	389	507	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	370	377	PKKKRVKL
2	370	378	PKKKRVKLD

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g037100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161539	1e-136	AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBank	CP002687	1e-136	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97337	1e-136	Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010440393.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	R0F1B1	0.0	R0F1B1_9BRAS; Uncharacterized protein
STRING	XP_010440393.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]