PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g046590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 211aa    MW: 24219.6 Da    PI: 8.7528
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g046590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221456.5e-45276175
          DUF822  1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskp 75
                    ++++r+ptw+ErEnnkrRERrRRa+a ki++GLR++Gny+lpk++DnneVlkAL +eAGw+ve+D ttyrk +  
  Csa11g046590.1  2 TSGTRMPTWRERENNKRRERRRRAMADKIFTGLRMYGNYELPKHCDNNEVLKALYNEAGWIVEPDSTTYRKKFAG 76
                    5899******************************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.9E-42376IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTSGTRMPTW RERENNKRRE RRRRAMADKI FTGLRMYGNY ELPKHCDNNE VLKALYNEAG  60
WIVEPDSTTY RKKFAGEEGE GVDVQKLFAY IGLFTLVALW WLVWPLTALG MNPSLPYHTL  120
KVDEVVLANG FVGRVLSDYF WYVTMILCCQ LDDSKSQAFS DNFSKNSSST ETLSLEIYHS  180
NNIKRNTNLS QTQKLENLLA LRVNGIDTAK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A7e-18680372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B7e-18680372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C7e-18680372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D7e-18680372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g046590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0575382e-68AY057538.1 Arabidopsis thaliana AT4g32140/F10N7_50 mRNA, complete cds.
GenBankAY1130572e-68AY113057.1 Arabidopsis thaliana AT4g32140/F10N7_50 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155111117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.15e-29BES1/BZR1 homolog 4