PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g055350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 226aa    MW: 25426.6 Da    PI: 9.6411
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g055350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-151561148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     r+ W   Ed++l ++v+++G+++W+ Ia++++ gRt+k c+ rw  +l
   Csa11g055350.1 15 RDQWKLSEDLKLRELVAEYGPRNWNQIAEKIQ-GRTGKTCRARWSRHL 61
                     789*****************************.***********8775 PP
2Myb_DNA-binding361.6e-1167109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++T  E+ +l++a ++lG++ W++Ia+ ++ gR+++ +++ w 
   Csa11g055350.1  67 KKSFTNKEEAILLEAYEKLGSK-WSLIAKLLP-GRSDEAVINNWT 109
                      5789******************.*********.*******99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.0831065IPR017930Myb domain
SuperFamilySSF466898.8E-2514108IPR009057Homeodomain-like
SMARTSM007171.2E-121463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221769IPR009057Homeodomain-like
PfamPF139211.6E-141875No hitNo description
CDDcd001672.48E-111861No hitNo description
SMARTSM007173.4E-1066114IPR001005SANT/Myb domain
PROSITE profilePS5129413.02266116IPR017930Myb domain
CDDcd001674.10E-769112No hitNo description
Gene3DG3DSA:1.10.10.604.1E-1670115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNHEERNKEK ISSSRDQWKL SEDLKLRELV AEYGPRNWNQ IAEKIQGRTG KTCRARWSRH  60
LDPMISKKSF TNKEEAILLE AYEKLGSKWS LIAKLLPGRS DEAVINNWTR IMKRKTRKQS  120
TSPHELTTND TTEDSASDES REINNSNRKM PKEETTDLTE AMQYSALHHH LSIVPAVPLA  180
MSAPPHVSIS QPSSSSSSSS LPSKAEDTKA KIPPKFIDFL GVGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291811630128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g055350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445650.11e-165PREDICTED: myb-related protein B-like
SwissprotQ9SEZ43e-40MY105_ARATH; Transcription factor MYB105
TrEMBLR0H1964e-88R0H196_9BRAS; Uncharacterized protein
STRINGXP_010445650.11e-164(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1909957
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.22e-49myb domain protein 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]