PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g055720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 369aa    MW: 42271.4 Da    PI: 5.7055
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g055720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61.1e-11164203444
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      WT+  d++l+++v+ +G ++W++Ia++m+ +R++  c+ rw
   Csa11g055720.1 164 WTESQDLKLIELVEAYGLESWNLIAEKMQ-TRSAQGCRMRW 203
                      *****************************.**********9 PP
2Myb_DNA-binding37.36.4e-12214256246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +T+ E+el + a k++G++ W++Ia+ ++ +Rt++ ++ +++ 
   Csa11g055720.1 214 TEFTKAEEELMITAQKLYGNK-WSKIAKLLN-RRTDYAVRMHFNR 256
                      579******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.527156207IPR017930Myb domain
SuperFamilySSF466892.12E-22160254IPR009057Homeodomain-like
SMARTSM007171.8E-9160209IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-20163214IPR009057Homeodomain-like
CDDcd001673.71E-10164203No hitNo description
PfamPF139211.0E-13164223No hitNo description
PROSITE profilePS5129417.78208262IPR017930Myb domain
SMARTSM007171.8E-8212260IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-14215257IPR009057Homeodomain-like
CDDcd001679.68E-8215258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSVLGAFQVK YPMGQDYSYS QPDSSDEYDR YSQDTEEREV EALIRMDEAE SNLLNTQATL  60
YPPQPEVEFG FPKVCYCGGQ PILSSNENRR FFTCGNVDDG DMHIHKWWDA AVMEEISEMN  120
RQRELLTEKR PANGDGANNE LPLREMRQER KKKTKRPSRG ERLWTESQDL KLIELVEAYG  180
LESWNLIAEK MQTRSAQGCR MRWVHELDPK LNKTEFTKAE EELMITAQKL YGNKWSKIAK  240
LLNRRTDYAV RMHFNRNVWR QTEPNITFSP APLNPYAYTV PGNGSYEGIG IKNYSCNTPN  300
EEATNLYARM PVQLSGHQHH FPTFPAGSSS ALFTPHVSIS QPSSSPEAED TMMRKPPKFI  360
DFLGVGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2316426310109B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156ERKKKTKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g055720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445657.11e-167PREDICTED: transcriptional activator Myb-like
STRINGXP_010445657.11e-166(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17330310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39700.13e-43myb domain protein 89