PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g055790.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ZF-HD

Protein Properties

Length: 343aa MW: 37111.8 Da PI: 8.4363

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g055790.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	107.3	9.2e-34	54	110	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa+lGgha+DGCgEfmps+++ +++++lkCaACgCHRnFHRr++++ Csa11g055790.1 54 FTYKECLKNHAAALGGHALDGCGEFMPSPSSIsSDPTSLKCAACGCHRNFHRRDPDN 110 68************************9999899****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-9	51	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.9E-31	55	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.1E-28	55	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.629	56	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.77E-19	194	268	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-29	196	268	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.0E-25	207	264	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MMDMTPTTIT TTTPTPKSPE PESETPTRIQ PAKPISFSNG IIKRHHHHHH PLLFTYKECL 60 KNHAAALGGH ALDGCGEFMP SPSSISSDPT SLKCAACGCH RNFHRRDPDN NDNNNNNDSS 120 SPIPLPPSAA VEYQPHHRHH PPPPLPPPPP PRSPNSSSPP PISSSYMLLS LSGTNNNNNN 180 NNLASFSDLN FSGGHHHHHQ HNLHGSRKRF RTKFSQFQKE KMHEFAERLG WKMQKRDDDD 240 VREFCRQIGV DKSVLKVWMH NNKNTFNRRD LAGTEIRKID IGGGGNHAPV LSGEINNNNN 300 GHHGGGGGEL HPSVSSGGGG GGFDSDSGGV HGGGNVNGSS SS*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MMDMTPTTIT TTTPTPKSPE PESETPTRIQ PAKPISFSNG IIKRHHHHHH PLLFTYKECL  60
KNHAAALGGH ALDGCGEFMP SPSSISSDPT SLKCAACGCH RNFHRRDPDN NDNNNNNDSS  120
SPIPLPPSAA VEYQPHHRHH PPPPLPPPPP PRSPNSSSPP PISSSYMLLS LSGTNNNNNN  180
NNLASFSDLN FSGGHHHHHQ HNLHGSRKRF RTKFSQFQKE KMHEFAERLG WKMQKRDDDD  240
VREFCRQIGV DKSVLKVWMH NNKNTFNRRD LAGTEIRKID IGGGGNHAPV LSGEINNNNN  300
GHHGGGGGEL HPSVSSGGGG GGFDSDSGGV HGGGNVNGSS SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-21	206	265	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269\|PubMed:17387478}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g055790.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellic acid (GA). {ECO:0000269\|PubMed:17387478}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB016876	0.0	AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBank	AK228484	0.0	AK228484.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-09-C01.
GenBank	AY091034	0.0	AY091034.1 Arabidopsis thaliana unknown protein (At5g39760) mRNA, complete cds.
GenBank	AY117347	0.0	AY117347.1 Arabidopsis thaliana unknown protein (At5g39760) mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441087.1	0.0	PREDICTED: zinc-finger homeodomain protein 10
Swissprot	Q9FIW9	1e-119	ZHD10_ARATH; Zinc-finger homeodomain protein 10
TrEMBL	R0H571	1e-118	R0H571_9BRAS; Uncharacterized protein
STRING	XP_010441087.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39760.1	8e-51	homeobox protein 23

Publications ? help Back to Top
Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology. Plant Signal Behav, 2014. 9(3): p. e28211 [PMID:24614501] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Kazama D, et al. Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis. Plants (Basel), 2013. 2(4): p. 769-85 [PMID:27137403]