PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g055920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 164aa    MW: 18575.9 Da    PI: 9.9052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g055920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.3e-07951302054
                     HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       +Lr++lP+   + +s K+s + +L+++++YI+sL
  Csa11g055920.1  95 VTKLRQILPEiGQRRRSDKVSASKVLQETCNYIRSL 130
                     579*******999*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.80175130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-690146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-793149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-494130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSNRRSSRQS SSAPRISDDQ MIDLVTKLRQ ILPEIGQRRR SDKCGIEGES KREEAHSLTR  60
VEHSLATLLN MSNRRSSRQS SSAPRISDDQ MIDLVTKLRQ ILPEIGQRRR SDKVSASKVL  120
QETCNYIRSL NREVDNLSER LSQLLESVDE DSPEAAVIRS LLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g055920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0882461e-114AY088246.1 Arabidopsis thaliana clone 4734 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444202.13e-51PREDICTED: transcription factor PRE1 isoform X1
SwissprotQ9LJX18e-49PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A087GTI33e-51A0A087GTI3_ARAAL; Uncharacterized protein
STRINGA0A087GTI35e-52(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.11e-46bHLH family protein