PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g057180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25764.2 Da    PI: 10.2119
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g057180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.93.5e-20756251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +++++s   v +s+R+++++ KAe LSvLC+++v+vi+++++g l+++++
  Csa11g057180.1  7 SSSSSSYPLVALSNRLETVFRKAEQLSVLCQIDVCVIYYGPKGDLKTFPN 56
                    688899999***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-121689IPR002100Transcription factor, MADS-box
PfamPF003195.7E-111654IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.611658IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MRSLPSSSSS SSYPLVALSN RLETVFRKAE QLSVLCQIDV CVIYYGPKGD LKTFPNEKEK  60
VRNMAMRYSR LNDSLRSKKR VSLSEFLKDK GLENPNKRRK TTTSPKKNYV DVLKYPISDH  120
YSPDQIPQLI QSLQLNLSTF QQRLRFLVSQ EKHKQLLDHH HQSFVPSTSS SSLTTPSLNP  180
SQQFSLFVYN HGDNTLSQIP VSASNLNQDF SALLQESQLK NGHNMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17799KKRVSLSEFLKDKGLENPNKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g057180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445670.11e-164PREDICTED: agamous-like MADS-box protein AGL75
SwissprotQ9FLL04e-73AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLR0F2836e-82R0F283_9BRAS; Uncharacterized protein
STRINGXP_010445670.11e-163(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.13e-69AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]