PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g057670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 424aa    MW: 48931.9 Da    PI: 6.6814
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g057670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-15185229348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +WT+ Ed  l+++vk+  ++ W++Ia+++  gRt+kqc++rwq++l
   Csa11g057670.1 185 KWTKSEDTELKKLVKEVEPNKWTKIAKKLK-GRTGKQCRERWQNHL 229
                      8****************************9.*************97 PP
2Myb_DNA-binding48.61.9e-15237279347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eEd++l++++k  G++ W +Ia++++ gR+++ +k++w++ 
   Csa11g057670.1 237 AWSKEEDQILIELHKVVGTK-WVKIAQELP-GRSPNCIKNHWNTT 279
                      6*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.81178233IPR017930Myb domain
SMARTSM007171.3E-15182231IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-28182276IPR009057Homeodomain-like
CDDcd001672.60E-14185229No hitNo description
Gene3DG3DSA:1.10.10.604.2E-20185232IPR009057Homeodomain-like
PfamPF139211.3E-17186244No hitNo description
Gene3DG3DSA:1.10.10.604.2E-21233282IPR009057Homeodomain-like
SMARTSM007174.6E-14234282IPR001005SANT/Myb domain
PROSITE profilePS5129420.149234284IPR017930Myb domain
CDDcd001674.19E-11237278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MKFSHNITNE NFIFNEAHQS LVTTDASYIP FYNNNLDQSS LNKWFLPPDL TDISSHHQLN  60
PIPSIPKQSQ DFLNQNLDNT QNHLVYNSPS YEVPSNYPFG HTLRDETVHN AELTKRVCVP  120
ALDQMMGGPR SFDVPVPESI KNTTREIMNQ HESQKMVKTY QKEKKKMVRT SKHSKKGNII  180
KAKAKWTKSE DTELKKLVKE VEPNKWTKIA KKLKGRTGKQ CRERWQNHLH PDIKDAAWSK  240
EEDQILIELH KVVGTKWVKI AQELPGRSPN CIKNHWNTTM RRVQKQSGEN LNLAHNNILE  300
NYVRYVIINN DNLSKTTETD GETTNTEDDD EYKDMFFEES DSNMDGGTHI IDVRTQTIDA  360
GTQTMDAGMQ TIDASMQTNQ PLVNAPTTSY YVPTPEMFTW KNYATELCEP VNDSLKDLMQ  420
WWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-351832824103MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-361832824103C-Myb DNA-Binding Domain
1msf_C9e-361832824103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g057670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441183.10.0PREDICTED: myb-like protein A
TrEMBLA0A178UAQ01e-116A0A178UAQ0_ARATH; MYB22
STRINGXP_010441183.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40430.12e-81myb domain protein 22