PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g059570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 644aa    MW: 74095.1 Da    PI: 9.1771
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g059570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-09433475146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el ++  k++G++ W+t a  +g  + +k++k+ w+ 
   Csa11g059570.1 433 KGVWTQEDLELVIEFQKKHGND-WRTLADALG--KDRKHVKDAWRR 475
                      799*******************.********8..899****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-5359423IPR009057Homeodomain-like
SMARTSM007170.0094359430IPR001005SANT/Myb domain
PROSITE profilePS500904.588362423IPR017877Myb-like domain
PROSITE profilePS500907.48428477IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.6E-7432475IPR009057Homeodomain-like
SMARTSM007171.7E-4432479IPR001005SANT/Myb domain
SuperFamilySSF466895.16E-8432490IPR009057Homeodomain-like
PfamPF139211.2E-10436494No hitNo description
PROSITE profilePS500907.085478546IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-6481547IPR009057Homeodomain-like
SMARTSM007175.5482548IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-5526601IPR009057Homeodomain-like
PROSITE profilePS500907.538548601IPR017877Myb-like domain
SMARTSM0071731552603IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAEENKKKKK SDDIRVDSGG TVEEVVSEHS SMKKEKKKKK KNREIKDGFA GEDGEIAERE  60
SEKLGEDALV KKNKSKKQMI DSEAGDGMKK KKSKKDKEAK VDSEAEDGVK KKKKKKKKKK  120
SKKESGSDVR GNSESSKVCD KRKREDCDLG DEKYTDKEVK RKSKKKKTSV VSDTSLNSTN  180
DAKRSIMETN TSVDPEAANK DSTKHAKKER KKKEKQQSVD SDVEDNNLIN STNDASKKSK  240
EKEPSKDSEL EEHSKNSKKD AKKIHNVDSE ADENDLTSTK DAKKKRKKKK QSEVSEAEET  300
NNDAKKKRKK KQECGQSDKD VTTPSSKSTK RVTFSDQVEF FPAEDEESEE DEAEVKLVRG  360
KRFTKEEDEL VKKAVLEYVD NHALGDNGIK MVMECKSHPQ LKGCWKEIAS TLPWRAYDSV  420
YHRAHTIFEE GSKGVWTQED LELVIEFQKK HGNDWRTLAD ALGKDRKHVK DAWRRIRLAS  480
KKKGHWTREE YQNLFDLVNK DIRMKAFQEK HAKHGMLKDN IPWMAISDVL GTRDHVTCCN  540
KWYDQLTSPM VAKGTWANVD DYRLLEELLK LDAACIDDVD WDYLLENRDG EACRKRWNQM  600
VLHIGIPKSK TFVEQVEILS ERYRPDIAED REDFDNRPYD PED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113122KKKKKKKSKK
2114122KKKKKKSKK
3209214RKKKEK
4287309KKKQSEVSEAEETNNDAKKKRKK
5304310KKKRKKK
6305309KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g059570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100720.0AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankAY5196530.0AY519653.1 Arabidopsis thaliana MYB transcription factor (At5g41020) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441265.10.0PREDICTED: cyclin-D-binding Myb-like transcription factor 1
TrEMBLR0GFG20.0R0GFG2_9BRAS; Uncharacterized protein
STRINGXP_010441265.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein