PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g059580.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 229aa MW: 24973.5 Da PI: 10.5445

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g059580.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.1	1.3e-33	48	128	2	83
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 +kk++++++h kv+gR+RRvRl+++caar+++L++eLG+++d++tieWLlqqa+p+i+ +tg++ ++ ++ +es ++s+ Csa11g059580.1 48 QKKKKPNKDRHLKVEGRGRRVRLPVLCAARIYQLTKELGLKSDGETIEWLLQQAEPSIISATGNGIKPVGAT-TESVVVSQP 128 579*************************************************************77776333.333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.794	54	108	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.5E-26	54	121	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MNNDKNRKQT VVKGFDIVVG DKELKRKTKT KEKEKEEQQQ IQLLGEEQKK KKPNKDRHLK 60 VEGRGRRVRL PVLCAARIYQ LTKELGLKSD GETIEWLLQQ AEPSIISATG NGIKPVGATT 120 ESVVVSQPRP LLTADLMVGH HNTQGGAPTP RSQMAANGLL RWMNETWQNT TQRLFDLNCG 180 FGFGFKGVSE MGFGNNPRPG LELGLSHGSG NVGGFVSAGL SANGSRTV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g059580.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019087527.1	1e-138	PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP6-like, partial
Swissprot	Q9FLM6	8e-69	TCP6_ARATH; Transcription factor TCP6
TrEMBL	D7MIZ9	3e-77	D7MIZ9_ARALL; Uncharacterized protein
STRING	XP_010445711.1	1e-138	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	2e-65	TCP family protein

Publications ? help Back to Top
Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]