PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g059700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 176aa    MW: 20458 Da    PI: 9.2824
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g059700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57381.99.1e-2659150697
          DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                      w++  e+++ +G++d++++t++s+++d++a+y+ +++s+++++sk+ql +Ki ++K +f++ +++++ +k psf  ++d++if+ls  iWg
  Csa11g059700.1  59 NWTKAGELLIFKGIVDYEKETKSSYMSDWNAVYDRLRGSMESDFSKRQLQNKIEKMKLRFRDYQTRSSAEKIPSFIDADDKQIFKLSTVIWG 150
                     6******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.0E-2159150IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKRHHRQRSD SSEDSSSDCF VIRHNPQPPP MMDEDDHEIG QLKTKTFCFS SPSGAWKLNW  60
TKAGELLIFK GIVDYEKETK SSYMSDWNAV YDRLRGSMES DFSKRQLQNK IEKMKLRFRD  120
YQTRSSAEKI PSFIDADDKQ IFKLSTVIWG GNKTDTASYE KYMYQRKVQV SNGTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g059700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436055.12e-57PREDICTED: GLABROUS1 enhancer-binding protein-like 3
TrEMBLR0F6M49e-49R0F6M4_9BRAS; Uncharacterized protein
STRINGXP_010436055.17e-57(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14516816
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.16e-28DNA-binding storekeeper protein-related transcriptional regulator