PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g061430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 179aa    MW: 20234.2 Da    PI: 10.0684
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g061430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57351.43.1e-1654139391
          DUF573   3 fqrl.wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                     +qrl + ee ei++LqG++d+ a tgk+p+ ++++ +ef+k+  +++ s +++veK+ +LKkK  +++++    keps s   +qk+ +l
  Csa11g061430.1  54 SQRLeYEEEEEISVLQGILDCYAVTGKNPFVNMKETFEFMKEYTNLE-SFDEFVEKMNSLKKKLMDQRSN---AKEPSTSDCYYQKVSKL 139
                     689989************************************99998.5678**************9999...78888888888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-959139IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGKVNSNRSK KKEVCSGSGV AQLTGKKRKN EGTLLANKDV NAKRSKKVAK KVCSQRLEYE  60
EEEEISVLQG ILDCYAVTGK NPFVNMKETF EFMKEYTNLE SFDEFVEKMN SLKKKLMDQR  120
SNAKEPSTSD CYYQKVSKLL TLSSGDDVGS AVEKPKRSKR VVKPKEEKQT VMRREGEK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1928KKKEVCSGSGVAQLTGKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g061430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087534.11e-126PREDICTED: probable transcription factor At4g00232
TrEMBLR0I4G62e-46R0I4G6_9BRAS; Uncharacterized protein
STRINGXP_010490439.11e-101(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16691712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00232.13e-27DNA-binding storekeeper protein-related transcriptional regulator