PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g064040.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 398aa MW: 45044.8 Da PI: 8.2615

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g064040.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.3	1.3e-25	301	384	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev+aLi r+++e++ + k+ W+e+s++m+erg+ rs+k+Ckekwen+nk+y+++ eg +k+ +e+s+t +yf++l Csa11g064040.1 301 RWPQEEVQALISTRSDVEDKAVMN-NKGSIWDEISARMKERGYDRSAKKCKEKWENMNKYYRRVMEGGRKQ-PEHSKTRSYFEKLA 384 8***************997765.89**************************************95.9********995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0069	298	359	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-5	300	357	IPR009057	Homeodomain-like
Pfam	PF13837	5.2E-20	300	385	No hit	No description
PROSITE profile	PS50090	7.596	301	357	IPR017877	Myb-like domain
CDD	cd12203	2.30E-22	302	363	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MELLAGDCRK RVGDDFDEDV DPFDGSGGGC GWMYGSRQSD SQGNDDALAT LADLASPPQK 60 LKPIRCGVKP PSDDRHPLDI LVGTLDRLPE MGFGCFEAPL GSKIADVGQS GQLTRGIPKG 120 DDAGAPLPLH LQFQARNRLS LDGVSLSSSV NSDSDSSPDV RKTVAGKRKR ETRVNLEQFL 180 EKLVGSMMKR QEKMHNQLIK VMEKMEGERI RREEAWRQQE IERMQQNEEA RKQEMARSFS 240 IITFIKSVIG DDIEIPKPSV FPQPLQQILP EQCEDKKCGS ARTQREIKFR YSRGGSSSGR 300 RWPQEEVQAL ISTRSDVEDK AVMNNKGSIW DEISARMKER GYDRSAKKCK EKWENMNKYY 360 RRVMEGGRKQ PEHSKTRSYF EKLADLYKTN FSGEREE*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MELLAGDCRK RVGDDFDEDV DPFDGSGGGC GWMYGSRQSD SQGNDDALAT LADLASPPQK  60
LKPIRCGVKP PSDDRHPLDI LVGTLDRLPE MGFGCFEAPL GSKIADVGQS GQLTRGIPKG  120
DDAGAPLPLH LQFQARNRLS LDGVSLSSSV NSDSDSSPDV RKTVAGKRKR ETRVNLEQFL  180
EKLVGSMMKR QEKMHNQLIK VMEKMEGERI RREEAWRQQE IERMQQNEEA RKQEMARSFS  240
IITFIKSVIG DDIEIPKPSV FPQPLQQILP EQCEDKKCGS ARTQREIKFR YSRGGSSSGR  300
RWPQEEVQAL ISTRSDVEDK AVMNNKGSIW DEISARMKER GYDRSAKKCK EKWENMNKYY  360
RRVMEGGRKQ PEHSKTRSYF EKLADLYKTN FSGEREE*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g064040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB025628	0.0	AB025628.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441426.1	0.0	PREDICTED: trihelix transcription factor GTL1
TrEMBL	D7MP23	0.0	D7MP23_ARALL; Predicted protein
STRING	XP_010441426.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9411	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	0.0	Trihelix family protein