PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g065130.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 462aa MW: 51974.9 Da PI: 6.5275

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g065130.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2e-12	293	338	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RR+++N++f Lr ++P+ K++K + Le Av+YI++L Csa11g065130.1 293 NHVEAERMRREKLNHRFYALRAVVPNV-----SKMDKTSLLEDAVRYINEL 338 799*********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.5E-50	35	227	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	1.51E-13	288	339	No hit	No description
SuperFamily	SSF47459	4.58E-17	289	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.806	289	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-16	293	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-10	293	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-14	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005509	Molecular Function	calcium ion binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MNTDDNLSMI EALLTSDLWP PLPPAKHHLS LETTLQKRLH AVLSGTHEPW TYAIFWKPSD 60 FDLSGESVLK WGDGVYNGDD EEKTGRRLRR TIKKTIPSSP EEKERWSKVL RELNSMISGE 120 PFPVVEEDDA KDDVEVTDTE WFFLVSMTWT FGNGSGLAGK AFTTYNPVWV TGSDQIYGSG 180 CDRAKQGGVL GLQTIVCIPS DNGVLELGST EQISQNSNLF NKIRYLFSFE GSKYFSGAPT 240 SAQFRSSIHN PNPNPVYQPI QINLSGEEMV IPEMKPGKKR GRKPMHGREK PLNHVEAERM 300 RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVRYINELKS TAENAESERN AVQNQLNELK 360 KITGRQNATS SVVCNDDKEN VSELKIEVKA MGSDVMIRVE SGKRNHPGAR LMNALMDLEL 420 EVSHASISVM NDLMIQQATV KMGLRIYEQE QLRDMLKSKI N*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MNTDDNLSMI EALLTSDLWP PLPPAKHHLS LETTLQKRLH AVLSGTHEPW TYAIFWKPSD  60
FDLSGESVLK WGDGVYNGDD EEKTGRRLRR TIKKTIPSSP EEKERWSKVL RELNSMISGE  120
PFPVVEEDDA KDDVEVTDTE WFFLVSMTWT FGNGSGLAGK AFTTYNPVWV TGSDQIYGSG  180
CDRAKQGGVL GLQTIVCIPS DNGVLELGST EQISQNSNLF NKIRYLFSFE GSKYFSGAPT  240
SAQFRSSIHN PNPNPVYQPI QINLSGEEMV IPEMKPGKKR GRKPMHGREK PLNHVEAERM  300
RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVRYINELKS TAENAESERN AVQNQLNELK  360
KITGRQNATS SVVCNDDKEN VSELKIEVKA MGSDVMIRVE SGKRNHPGAR LMNALMDLEL  420
EVSHASISVM NDLMIQQATV KMGLRIYEQE QLRDMLKSKI N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	7e-50	32	229	6	194	Transcription factor MYC3
4rqw_B	7e-50	32	229	6	194	Transcription factor MYC3
4rs9_A	7e-50	32	229	6	194	Transcription factor MYC3
4yz6_A	7e-50	32	229	6	194	Transcription factor MYC3
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00547	DAP	Transfer from AT5G46830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g065130.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441529.1	0.0	PREDICTED: transcription factor bHLH28-like
Swissprot	Q9LUK7	0.0	BH028_ARATH; Transcription factor bHLH28
TrEMBL	R0G888	0.0	R0G888_9BRAS; Uncharacterized protein
STRING	XP_010441529.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13953	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	0.0	NACL-inducible gene 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]